Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0788
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48077| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_11652| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)                  28   6.7  
SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.9  
SB_48330| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_23071| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_48077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = +2

Query: 233 LPRWPDYVRYFDRALWVVEKCARWAVPPPLDQDERPQPELIRP---LPWVFFLMMLIALR 403
           LPRWP YV  +  +L  +    R  VP  +   E P  + +     LP+   L++  A+ 
Sbjct: 159 LPRWPTYV--YPESLKAI---VRLIVPGSVKDFEDPDHDSVASTDNLPYGLQLLVDEAMI 213

Query: 404 ITRETISLANLIMGKPPLRSADVVMYIQSKRRYLRP 511
             R  +S    I  KP  R   V+     ++R  RP
Sbjct: 214 KYRGRLSFVQYIQMKPNKRERWVISDFNRRKRVGRP 249


>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1283

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 510  PQVPGEPH-XASPHQHRQPAPRHLVQRDQIDV 602
            P +PG PH  ASP  H  P P  + ++   D+
Sbjct: 1030 PLIPGSPHRGASPMPHEPPTPTRMEKKTVDDL 1061


>SB_11652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 194 KGNASDFGRARGQLPRWPDYVRYFDRALWVVEKCAR 301
           KG A DF   R ++     Y   FDR  W+V++C R
Sbjct: 136 KGRAQDF-TIRARIRSLLGYELPFDRHDWIVDRCGR 170


>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
          Length = 682

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 510 PQVPGEPH-XASPHQHRQPAPRHLVQRDQIDV 602
           P +PG PH  ASP  H  P P  + ++   D+
Sbjct: 163 PLIPGSPHRGASPMPHEPPTPTRMEKKTVDDL 194


>SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1593

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +2

Query: 263  FDRALWVVEKCARWAVPPPLDQ--DERPQPELIRPLPWVFFLMMLIALRITRETISLANL 436
            F R  W ++KC +W      +   DE    EL+    WV      ++L+   ++  +   
Sbjct: 757  FHRPKWSIKKCKKWEFTGSFEDIADENVPRELVSFFRWVIQGPFDLSLQHESKSNEVNKR 816

Query: 437  IMGKPPLRSADVVMYIQSKR-RYLRPSSTR 523
             M    L  + V M++  ++ R+ +  STR
Sbjct: 817  AMS---LTESTVAMFLSDRQVRHKKAESTR 843


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 501  IYGPQVPGEPHXASPHQHRQPAPRHL 578
            I+ P  PG P  A+ H H+ PAP H+
Sbjct: 1526 IFLPTSPGPP--ATDHTHQPPAPSHM 1549


>SB_48330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 275 LWVVEKCARWAVPPPLDQDERPQP 346
           +W+V  C RW VP P     R  P
Sbjct: 449 VWIVLPCTRWTVPQPAYFHSRGSP 472


>SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 501 IYGPQVPGEPHXASPHQHRQPAPRHL 578
           I+ P  PG P  A+ H H+ PAP H+
Sbjct: 198 IFLPTSPGPP--ATDHTHQPPAPSHM 221


>SB_23071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1208

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 275  LWVVEKCARWAVPPPLDQDERPQP 346
            +W+V  C RW VP P     R  P
Sbjct: 1151 VWIVLPCTRWTVPQPAYFHSRGSP 1174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,003,829
Number of Sequences: 59808
Number of extensions: 428119
Number of successful extensions: 1045
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)