Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0788
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54271-3|CAA91039.1|  713|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z54271-3|CAA91039.1|  713|Caenorhabditis elegans Hypothetical
           protein F21D5.3 protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/25 (40%), Positives = 20/25 (80%)
 Frame = +1

Query: 616 CFRRHSLSYNNNPGNASSXDEVLVV 690
           CF+ +S ++ ++PG+A+  ++VLVV
Sbjct: 55  CFQNYSFNHISDPGDANRMEDVLVV 79


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
 Frame = -3

Query: 583 CTRCR----GAGWRCWCGLAXCGSPGT*GP*ISTFALYVHDHISRPQRR 449
           CT CR    G G  C CG   CG  G     + T  + + + + R  R+
Sbjct: 113 CTCCRPCCCGCGCGCGCGCCGCGGGGRKRRSLQTLKIKLAEKVQREARQ 161


>Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 289 EMCEMGRASTFGSRRAPATRTDPPSALGILSDDANCSANHSRD 417
           EMC  G A     ++   T+    S L ILSDD+  S N S D
Sbjct: 290 EMCFPG-ADNRRKQQQAVTQATKDSILNILSDDSGVSVNDSSD 331


>Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 289 EMCEMGRASTFGSRRAPATRTDPPSALGILSDDANCSANHSRD 417
           EMC  G A     ++   T+    S L ILSDD+  S N S D
Sbjct: 290 EMCFPG-ADNRRKQQQAVTQATKDSILNILSDDSGVSVNDSSD 331


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
            protein H11E01.3 protein.
          Length = 1464

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 531  HXASPHQHRQPAPRHLVQRDQI 596
            H ASPHQ+ +  P HLV   ++
Sbjct: 1221 HLASPHQNFEDEPSHLVDESEV 1242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,236,114
Number of Sequences: 27780
Number of extensions: 306255
Number of successful extensions: 858
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)