BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0788 (726 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z54271-3|CAA91039.1| 713|Caenorhabditis elegans Hypothetical pr... 29 4.5 Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 28 5.9 Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical p... 28 5.9 Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical pr... 28 5.9 AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 28 5.9 >Z54271-3|CAA91039.1| 713|Caenorhabditis elegans Hypothetical protein F21D5.3 protein. Length = 713 Score = 28.7 bits (61), Expect = 4.5 Identities = 10/25 (40%), Positives = 20/25 (80%) Frame = +1 Query: 616 CFRRHSLSYNNNPGNASSXDEVLVV 690 CF+ +S ++ ++PG+A+ ++VLVV Sbjct: 55 CFQNYSFNHISDPGDANRMEDVLVV 79 >Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical protein R13H4.8 protein. Length = 212 Score = 28.3 bits (60), Expect = 5.9 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%) Frame = -3 Query: 583 CTRCR----GAGWRCWCGLAXCGSPGT*GP*ISTFALYVHDHISRPQRR 449 CT CR G G C CG CG G + T + + + + R R+ Sbjct: 113 CTCCRPCCCGCGCGCGCGCCGCGGGGRKRRSLQTLKIKLAEKVQREARQ 161 >Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical protein T09F3.1 protein. Length = 355 Score = 28.3 bits (60), Expect = 5.9 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = +1 Query: 289 EMCEMGRASTFGSRRAPATRTDPPSALGILSDDANCSANHSRD 417 EMC G A ++ T+ S L ILSDD+ S N S D Sbjct: 290 EMCFPG-ADNRRKQQQAVTQATKDSILNILSDDSGVSVNDSSD 331 >Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical protein T09F3.1 protein. Length = 355 Score = 28.3 bits (60), Expect = 5.9 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = +1 Query: 289 EMCEMGRASTFGSRRAPATRTDPPSALGILSDDANCSANHSRD 417 EMC G A ++ T+ S L ILSDD+ S N S D Sbjct: 290 EMCFPG-ADNRRKQQQAVTQATKDSILNILSDDSGVSVNDSSD 331 >AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical protein H11E01.3 protein. Length = 1464 Score = 28.3 bits (60), Expect = 5.9 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 531 HXASPHQHRQPAPRHLVQRDQI 596 H ASPHQ+ + P HLV ++ Sbjct: 1221 HLASPHQNFEDEPSHLVDESEV 1242 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,236,114 Number of Sequences: 27780 Number of extensions: 306255 Number of successful extensions: 858 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 807 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 856 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1708383636 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -