Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0788
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.0  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 305 PISHISRPPTMLYRNTVRSLASAV 234
           P + + RP T+LY N     +SAV
Sbjct: 83  PYNRVWRPDTILYNNADPQYSSAV 106


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 124 HSYYPFLYSNSIPNF 168
           H+Y PF+ SNS+ NF
Sbjct: 237 HNYPPFMLSNSL-NF 250


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 124 HSYYPFLYSNSIPNF 168
           H+Y PF+ SNS+ NF
Sbjct: 237 HNYPPFMLSNSL-NF 250


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 519 PGEPHXASPHQHRQPAPRH 575
           P + H +  H HR  +P H
Sbjct: 318 PHQHHPSQYHPHRGSSPHH 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,737
Number of Sequences: 438
Number of extensions: 3810
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)