Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0788
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35710.2 68415.m04379 glycogenin glucosyltransferase (glycoge...    31   0.59 
At2g35710.1 68415.m04380 glycogenin glucosyltransferase (glycoge...    31   0.59 
At4g16600.1 68417.m02511 glycogenin glucosyltransferase (glycoge...    29   2.4  
At4g11230.1 68417.m01819 respiratory burst oxidase, putative / N...    29   4.1  
At2g42040.1 68415.m05199 expressed protein                             28   7.2  
At1g32260.1 68414.m03969 expressed protein identical to hypothet...    28   7.2  

>At2g35710.2 68415.m04379 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 389

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -2

Query: 611 VNSNIDLIPLYQVSRGWLAVLVRARXMRFPWY----LRAVNIYVCFVCT*P 471
           ++ N  L+P   V   WL +L     M FPWY    +RA++++    C  P
Sbjct: 300 ISINTLLLPTLPVLTPWLGILGTLLVMAFPWYPDGVVRALSVFAYAFCCAP 350


>At2g35710.1 68415.m04380 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 497

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -2

Query: 611 VNSNIDLIPLYQVSRGWLAVLVRARXMRFPWY----LRAVNIYVCFVCT*P 471
           ++ N  L+P   V   WL +L     M FPWY    +RA++++    C  P
Sbjct: 408 ISINTLLLPTLPVLTPWLGILGTLLVMAFPWYPDGVVRALSVFAYAFCCAP 458


>At4g16600.1 68417.m02511 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-1 from
           Rattus norvegicus [SP|O08730], Homo sapiens [GI:496895],
           Mus musculus [SP|Q9R062]
          Length = 442

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -2

Query: 362 EGGSVLVAGARLDPKVEARPISHISRPPTMLYRNTVRSLASAVADRVLCQSLK 204
           E  + + A      K + RP  H +   TM+Y  T R     VA RVL +SLK
Sbjct: 36  ENANAMTAVMERGLKTQRRP-EHKNAYATMMYMGTPRDYEFYVATRVLIRSLK 87


>At4g11230.1 68417.m01819 respiratory burst oxidase, putative /
           NADPH oxidase, putative similar to respiratory burst
           oxidase homolog F [gi:3242456], RbohAp108 [gi:2654868]
           from Arabidopsis thaliana, respiratory burst oxidase
           homolog [GI:16549087] from Solanum tuberosum; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 941

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 571 DTWYSGIRSMFEFTMCFRRHSLSYNNNPGNASSXDEVLV 687
           D W S + S  EFT  F     +Y+ +P ++SS  E L+
Sbjct: 12  DRWGSDLASAGEFTQSFPSLPATYSPSPSSSSSSGEELL 50


>At2g42040.1 68415.m05199 expressed protein
          Length = 269

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 589 SRCTRCRGAGWRC 551
           SRC+R  G GWRC
Sbjct: 167 SRCSRVNGRGWRC 179


>At1g32260.1 68414.m03969 expressed protein identical to
           hypothetical protein GB:AAF81322 GI:8920600 from
           [Arabidopsis thaliana]
          Length = 202

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = -2

Query: 314 EARPISHISRPPTMLYRNTVRSLASAVADRVLCQSLKHFLYQ 189
           +A+ ++ +SRP +  + NT ++  +  +DR L  SLKHF ++
Sbjct: 104 KAKRLTELSRPKS--HTNTTQTPQNRESDRHLFTSLKHFRHK 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,262,699
Number of Sequences: 28952
Number of extensions: 282085
Number of successful extensions: 768
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)