Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0786
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 38 0.001
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 33 0.049
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 28 1.0
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 28 1.0
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 27 3.2
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.6
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 26 5.6
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 7.4
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 7.4
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ... 25 9.7
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 37.9 bits (84), Expect = 0.001
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Frame = +2
Query: 320 GLFNKPELTTFE-GFYTLKDQAIEATDRLIEXATNSPTRP---MVEIFDELSDTLCKVAD 487
GLF L+ + GF L + A E +IE T +V FD +S+ LC V D
Sbjct: 65 GLFRNHFLSDKDTGFLRLAETASEKCKAVIEDLLLEDTEDGSIVVSKFDRISNLLCSVID 124
Query: 488 LAEFVRILTPNHISHELLKKPVSALVEL 571
L EFVR P+ + ++ S L EL
Sbjct: 125 LFEFVRCAHPDKMVVMKAEEAYSYLFEL 152
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 511 HPQPHFARAAEEACISISGVVEKLNTHKGLYEALKKSVE 627
HP AEEA + ++ LNTH+GLYE LK S++
Sbjct: 133 HPDKMVVMKAEEAYSYLFELMNTLNTHQGLYEKLKCSLQ 171
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 32.7 bits (71), Expect = 0.049
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +2
Query: 368 LKDQAIEATDRLIEXATNSPTRPMVEIFDELSDTLCKVA 484
LK+ ++E+ D LIE + SPT + + + +L DTL ++
Sbjct: 630 LKNDSVESYDWLIEYGSQSPTSEVTDRYKKLDDTLKSIS 668
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 617 FFKASYKPLCVFNFSTTPLMLIQASS 540
FF+A Y+PL + FS ++L AS+
Sbjct: 113 FFRAHYQPLTILKFSNDGMVLFTASN 138
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 28.3 bits (60), Expect = 1.0
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Frame = +2
Query: 242 YLVTLATAFNTRPNSRPIFDSLK--ERTGLFNKPELT----TFEGFYTLKDQAIEATDRL 403
+L TL F ++PIFD ++ ++ K EL+ +G KD+ D L
Sbjct: 710 HLETLTKTFKNLSEAKPIFDEIELLDKRLSETKTELSDLQGDLQGLDIRKDEIQSELDTL 769
Query: 404 -IEXATNSPTRPMVEIFDELSDTLCKVADLAEFVRILTPNHISHELL 541
+ A + +V+ L + + + E +RI P+ I+H L
Sbjct: 770 YLRRANLEKLQLLVKDISNLEEEIRTIDRETEVLRIELPSSIAHHNL 816
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +2
Query: 281 NSRPIFDSLKERTGLFNKPELTTFEGFYTLKDQAIEATDRLIEXATNSPTRPMVEIFDEL 460
NSRP + T + PEL + +Y+ A E AT P P + FD+L
Sbjct: 192 NSRPPYTEYVS-TRWYRAPELLLRDSYYSFPVDIYAAGCMAFEIATLQPIFPGNDDFDQL 250
Query: 461 SDTLCKV 481
+C++
Sbjct: 251 Y-KMCEI 256
>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +2
Query: 371 KDQAIEATDRLIEXATNSPTRPMVEIF---DELSD-TLCKVAD 487
+ Q+I++TD T S R +EIF DEL D ++C D
Sbjct: 113 RSQSIQSTDSKQRVETQSHRRSKIEIFDAQDELFDRSICTTID 155
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 308 KERTGLFNKPELTTFEGFYTLKDQAIEATDRLIEXATNSPTR 433
+E T L + P + E +LKD+ I+A + IE TN P +
Sbjct: 54 RELTSLHDAPTIVANE---SLKDRDIDAIYQNIEKTTNKPAQ 92
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 523 VVGGEYPHKLSKICNFAQCVGKLIKY 446
V+ + P L+ C F Q VGK +KY
Sbjct: 304 VLHHQLPISLTDTCTFDQVVGKNVKY 329
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 623 TDFFKASYKPLCVFNFSTTPLMLIQASSA-ARAKCGW 516
T FFK+ ++P+ VF L +I A R+ GW
Sbjct: 907 TKFFKSIFRPMNVFVLKVGTLAVICTIPAFCRSSAGW 943
>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 650 CLSPDVPFSTDFFKASYKPLCVFNFSTTPLML 555
C+ P P+ TDF++ +Y P FS P L
Sbjct: 445 CIEPQ-PYGTDFYQYNYDP-NTRKFSRVPFSL 474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,680
Number of Sequences: 5004
Number of extensions: 52347
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -