BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0786 (662 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_03_0258 - 11153709-11156090 29 2.5 07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240... 28 7.6 06_01_1000 - 7778907-7780721 28 7.6 01_01_0900 + 7091970-7092068,7092175-7093131,7093210-7093968,709... 28 7.6 >05_03_0258 - 11153709-11156090 Length = 793 Score = 29.5 bits (63), Expect = 2.5 Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Frame = +2 Query: 293 IFDSLKERTGLFNKPELTTFEGF---YTLKDQAIEATDRLIEXATNSPTRPMVEIFDELS 463 +FDS+K+ +GL P+L T+ Y +++ EA +++++ +S +P V ++ + Sbjct: 623 MFDSIKQ-SGL--SPDLITYNSLMDMYAKSNESWEA-EKILKQLKSSQVKPDVVSYNTVI 678 Query: 464 DTLCKVADLAEFVRILT 514 + CK + E RIL+ Sbjct: 679 NGFCKQGLIKEAQRILS 695 >07_03_1764 + 29322683-29323387,29323809-29323889,29323968-29324072, 29324453-29325382,29326728-29326856,29326953-29327042, 29327237-29327293,29327362-29327394 Length = 709 Score = 27.9 bits (59), Expect = 7.6 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -2 Query: 151 ILSKEAV*QMLYYQSKLIEAQHTI*TRNALQIIF 50 + SKE + +LY + K +EA +T TRN Q ++ Sbjct: 279 VYSKEWLDSLLYVRPKALEASYTGRTRNGSQALY 312 >06_01_1000 - 7778907-7780721 Length = 604 Score = 27.9 bits (59), Expect = 7.6 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Frame = +2 Query: 254 LATAFNTRPNSRPIFDSLKERTGLFNKPELTTFEGFYTLKDQA--IEATDRLIEXATNSP 427 L F + ++ L+E + +P++ T+ + +A A D L+ + Sbjct: 394 LIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDG 453 Query: 428 TRPMVEIFDELSDTLCKVADLAEFVRIL 511 +P V F L CKV + E +RIL Sbjct: 454 CQPSVITFGTLVHGYCKVGKIDEALRIL 481 >01_01_0900 + 7091970-7092068,7092175-7093131,7093210-7093968, 7094322-7094366 Length = 619 Score = 27.9 bits (59), Expect = 7.6 Identities = 18/72 (25%), Positives = 31/72 (43%) Frame = +2 Query: 293 IFDSLKERTGLFNKPELTTFEGFYTLKDQAIEATDRLIEXATNSPTRPMVEIFDELSDTL 472 +FD + E G+ P++ + ++ Q E + L+ RP V F + Sbjct: 388 VFDKMIE-AGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGW 446 Query: 473 CKVADLAEFVRI 508 C VAD+ VR+ Sbjct: 447 CSVADMGNAVRV 458 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,452,680 Number of Sequences: 37544 Number of extensions: 321775 Number of successful extensions: 833 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 815 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 833 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1667659452 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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