Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0786
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26584| Best HMM Match : Peptidase_M3 (HMM E-Value=0)                56   3e-08
SB_48139| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.017
SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)                      30   1.9  
SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)               29   2.6  
SB_55708| Best HMM Match : UPF0103 (HMM E-Value=0.87)                  28   7.8  
SB_28840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_26584| Best HMM Match : Peptidase_M3 (HMM E-Value=0)
          Length = 851

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/51 (49%), Positives = 36/51 (70%)
 Frame = +2

Query: 368 LKDQAIEATDRLIEXATNSPTRPMVEIFDELSDTLCKVADLAEFVRILTPN 520
           +K+ A+ A   L++   +     +VE+FDELSDTLC+VADLAEFVR+  P+
Sbjct: 1   MKNTALSAGSDLVKKVLSKTGLELVEVFDELSDTLCRVADLAEFVRVSHPD 51



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 19/41 (46%), Positives = 24/41 (58%)
 Frame = +1

Query: 508 THPQPHFARAAEEACISISGVVEKLNTHKGLYEALKKSVEN 630
           +HP   F  AAEE  +S+S  VE LNT+  LY  LK +  N
Sbjct: 48  SHPDLEFREAAEETSLSVSNFVETLNTNHKLYSVLKNAFYN 88


>SB_48139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 25/71 (35%), Positives = 35/71 (49%)
 Frame = +2

Query: 314 RTGLFNKPELTTFEGFYTLKDQAIEATDRLIEXATNSPTRPMVEIFDELSDTLCKVADLA 493
           R  L N P   T E   T   +AI+A DR IE   N    P + +F +LSD   K+A L+
Sbjct: 7   RRSLINAPACAT-ETVSTHGREAIDAKDRKIEFNANRERLPAILLFTKLSDRALKIA-LS 64

Query: 494 EFVRILTPNHI 526
                L+ +H+
Sbjct: 65  RVSPSLSSSHV 75


>SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)
          Length = 909

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 144 DNISCNVKATMKLLKPLWILRNGRKKKLGCSVSTWSPWQQHST 272
           D +SC+ K   K +K +W L  G+      + +  +PW    T
Sbjct: 186 DLLSCSTKLGQKRIKAIWALVKGKSDLQSTTYNDMTPWYNSYT 228


>SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)
          Length = 426

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 490 KICNFAQCVGKLI-KYLDHRTRRAVGGXFYQTISCFDSLVLKRVEAFKSCELWFIEEAS 317
           K+C +    G L+ + +D   ++A  G  Y      DS  +      KSC++W IE+ S
Sbjct: 180 KLCLYDGKEGNLVAEIVDPALKKAHSGGIYGLSWSDDSKFILTASGDKSCKIWNIEDKS 238


>SB_55708| Best HMM Match : UPF0103 (HMM E-Value=0.87)
          Length = 334

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 392 TDRLIEXATNSPTRPMVEIFDELSDTLCKVADLAEFVRILTP 517
           TD  ++   N+P R  + + DEL  T+  + ++    ++ TP
Sbjct: 16  TDPTVKPKQNNPRRVPIPVKDELKKTIEDLEEMGVIAKVTTP 57


>SB_28840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 517 GGEYPHKLSKICNFAQCVGKLIKYLDHRTRRAV 419
           GG YP  L+++ + A C   L+ ++ +R  RA+
Sbjct: 544 GGSYPTPLNRVPSLADCY-DLVPFVSYRDNRAI 575


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,363,305
Number of Sequences: 59808
Number of extensions: 388371
Number of successful extensions: 1035
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)