BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0786 (662 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol... 50 1e-06 At2g18640.1 68415.m02171 geranylgeranyl pyrophosphate synthase, ... 30 1.2 At3g42390.1 68416.m04383 hypothetical protein 29 2.1 At5g65070.1 68418.m08185 MADS-box protein (MAF4) contains Pfam p... 29 2.8 At5g19260.1 68418.m02293 expressed protein various predicted pro... 29 3.6 At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containi... 29 3.6 At5g59250.1 68418.m07425 sugar transporter family protein simila... 28 6.4 At1g37020.1 68414.m04616 Ulp1 protease family protein 28 6.4 At5g54980.1 68418.m06847 integral membrane family protein simila... 27 8.4 At4g00460.1 68417.m00063 expressed protein contains Pfam profile... 27 8.4 At2g18620.1 68415.m02168 geranylgeranyl pyrophosphate synthase, ... 27 8.4 >At5g51540.1 68418.m06391 peptidase M3 family protein / thimet oligopeptidase family protein low similarity to SP|Q99797 Mitochondrial intermediate peptidase, mitochondrial precursor (EC 3.4.24.59) {Homo sapiens}; contains Pfam profile PF01432: Peptidase family M3 Length = 860 Score = 50.4 bits (115), Expect = 1e-06 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Frame = +2 Query: 311 ERTGLFNKPELTTFEGFYTLKDQAIEATDRLIEXATNSPTRP-MVEIFDELSDTLCKVAD 487 + TGL+ L T +GF AIE + L+ + P+ P +++ DE+SDT+C V D Sbjct: 29 DATGLYGFDHLKTAKGFQRFVADAIERSGELVSYISGMPSSPEIIKAMDEISDTVCCVVD 88 Query: 488 LAEFVRILTPNHISHELLKKPVSALVELS 574 AE R H E +++ A +E++ Sbjct: 89 SAELCR---QTHPDREFVEEANKAAIEMN 114 Score = 38.7 bits (86), Expect = 0.003 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = +1 Query: 496 VCEDTHPQPHFARAAEEACISISGVVEKLNTHKGLYEALKKSVEN 630 +C THP F A +A I ++ + LNT+ LY A+KK+ ++ Sbjct: 92 LCRQTHPDREFVEEANKAAIEMNDYLHHLNTNHTLYAAVKKAEQD 136 >At2g18640.1 68415.m02171 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative similar to gi:1944371; contains GB:L22347 Length = 372 Score = 30.3 bits (65), Expect = 1.2 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = -2 Query: 523 VVGGEYPHKLSKICNFAQCVGKLIKYLD 440 V+GG ++ K+ NFA+C+G L + +D Sbjct: 271 VIGGGTEKEIEKVRNFARCIGLLFQVVD 298 >At3g42390.1 68416.m04383 hypothetical protein Length = 126 Score = 29.5 bits (63), Expect = 2.1 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 Query: 305 LKERTGLFNKPELTTFEGFYTLKDQAIEATDR 400 LKE +F +PE+ F+ +TL D+++ T + Sbjct: 50 LKEEENVFEQPEVVVFDDSFTLVDESVIFTSK 81 >At5g65070.1 68418.m08185 MADS-box protein (MAF4) contains Pfam profile PF00319: SRF-type transcription factor (DNA-binding and dimerisation domain); contains Pfam profile PF01486: K-box region Length = 200 Score = 29.1 bits (62), Expect = 2.8 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 1/108 (0%) Frame = +2 Query: 308 KERTGLFNKPELTTFEGFYTLKDQAIEATDRLIEXATNSPTRPMVEIFD-ELSDTLCKVA 484 K R GL K + ++ I AT RL ++ ++ ++ E +D L K Sbjct: 23 KRRNGLMEKARQLSILCESSVALIIISATGRLYSFSSGDSMAKILSRYELEQADDL-KTL 81 Query: 485 DLAEFVRILTPNHISHELLKKPVSALVELSKS*TRTKACTKL*RSQLR 628 DL E T N++SH+ L + + +E +KS + C K QL+ Sbjct: 82 DLEE----KTLNYLSHKELLETIQCKIEEAKSDNVSIDCLKSLEEQLK 125 >At5g19260.1 68418.m02293 expressed protein various predicted proteins Length = 288 Score = 28.7 bits (61), Expect = 3.6 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +2 Query: 335 PELTTFEGFYTLKDQAIEATDRLIEXATNSPTR 433 P LTT GF ++ + RL+ ATN+P R Sbjct: 168 PPLTTMRGFQCIQMRPHRENGRLVMTATNAPPR 200 >At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containing protein low similarity to fertility restorer [Petunia x hybrida] GI:22128587; contains Pfam profile PF01535: PPR repeat Length = 946 Score = 28.7 bits (61), Expect = 3.6 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +2 Query: 332 KPELTTF----EGFYTLKDQAIEATDRLIEXATNSPTRPMVEIFDELSDTLCKVADLAEF 499 +P + T+ +GF K +E +L++ + P ++D L D LCKV L E Sbjct: 595 RPNVVTYGALLDGF--CKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEA 652 Query: 500 VRILT 514 + T Sbjct: 653 QEVKT 657 >At5g59250.1 68418.m07425 sugar transporter family protein similar to D-xylose-H+ symporter from Lactobacillus brevis GI:2895856, sugar-porter family protein 2 [Arabidopsis thaliana] GI:14585701; contains Pfam profile PF00083: major facilitator superfamily protein Length = 558 Score = 27.9 bits (59), Expect = 6.4 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = +2 Query: 251 TLATAFNTRPNSRPIFDSLKERTGLFNKPELTT 349 T + F +RP+S + SLKERT +KP L T Sbjct: 28 TFCSCFKSRPDSSYL--SLKERTCFVSKPGLVT 58 >At1g37020.1 68414.m04616 Ulp1 protease family protein Length = 611 Score = 27.9 bits (59), Expect = 6.4 Identities = 12/44 (27%), Positives = 22/44 (50%) Frame = +1 Query: 502 EDTHPQPHFARAAEEACISISGVVEKLNTHKGLYEALKKSVENG 633 EDT PH RA+E I +S + +++ +K+ + +G Sbjct: 337 EDTFSNPHVQRASEAMAIVLSSIEDQIKNLNDGKSTVKRIITDG 380 >At5g54980.1 68418.m06847 integral membrane family protein similar to unknown protein (gb|AAD50013.1); contains TIGRFAM TIGR01569 : plant integral membrane protein TIGR01569; contains Pfam PF04535 : Domain of unknown function (DUF588) Length = 194 Score = 27.5 bits (58), Expect = 8.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +3 Query: 432 VLWSRYLMSFPTHCAKLQILLSL 500 V WS S+P +C+KL I L L Sbjct: 137 VTWSEMCSSYPHYCSKLTIALGL 159 >At4g00460.1 68417.m00063 expressed protein contains Pfam profile PF03759: Domain of unknown function (DUF315) Length = 473 Score = 27.5 bits (58), Expect = 8.4 Identities = 8/23 (34%), Positives = 18/23 (78%) Frame = -2 Query: 385 DSLVLKRVEAFKSCELWFIEEAS 317 DS++++ +++F++ E W+ EE S Sbjct: 215 DSMLMEALDSFQNTEFWYAEEGS 237 >At2g18620.1 68415.m02168 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative similar to gi:413730 to geranylgeranyl pyrophosphate synthase, chloroplast precursor GB:P34802 from [Arabidopsis thaliana] synonymous with farnesyltranstransferase Length = 347 Score = 27.5 bits (58), Expect = 8.4 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = -2 Query: 523 VVGGEYPHKLSKICNFAQCVGKLIKYLD 440 +VGG ++ K+ FA+C+G L + +D Sbjct: 246 IVGGGSDEEVEKLRRFARCIGLLFQVVD 273 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,570,259 Number of Sequences: 28952 Number of extensions: 269786 Number of successful extensions: 699 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 682 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 698 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1393347168 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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