Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0786
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    50   1e-06
At2g18640.1 68415.m02171 geranylgeranyl pyrophosphate synthase, ...    30   1.2  
At3g42390.1 68416.m04383 hypothetical protein                          29   2.1  
At5g65070.1 68418.m08185 MADS-box protein (MAF4) contains Pfam p...    29   2.8  
At5g19260.1 68418.m02293 expressed protein various predicted pro...    29   3.6  
At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containi...    29   3.6  
At5g59250.1 68418.m07425 sugar transporter family protein simila...    28   6.4  
At1g37020.1 68414.m04616 Ulp1 protease family protein                  28   6.4  
At5g54980.1 68418.m06847 integral membrane family protein simila...    27   8.4  
At4g00460.1 68417.m00063 expressed protein contains Pfam profile...    27   8.4  
At2g18620.1 68415.m02168 geranylgeranyl pyrophosphate synthase, ...    27   8.4  

>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
 Frame = +2

Query: 311 ERTGLFNKPELTTFEGFYTLKDQAIEATDRLIEXATNSPTRP-MVEIFDELSDTLCKVAD 487
           + TGL+    L T +GF      AIE +  L+   +  P+ P +++  DE+SDT+C V D
Sbjct: 29  DATGLYGFDHLKTAKGFQRFVADAIERSGELVSYISGMPSSPEIIKAMDEISDTVCCVVD 88

Query: 488 LAEFVRILTPNHISHELLKKPVSALVELS 574
            AE  R     H   E +++   A +E++
Sbjct: 89  SAELCR---QTHPDREFVEEANKAAIEMN 114



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 496 VCEDTHPQPHFARAAEEACISISGVVEKLNTHKGLYEALKKSVEN 630
           +C  THP   F   A +A I ++  +  LNT+  LY A+KK+ ++
Sbjct: 92  LCRQTHPDREFVEEANKAAIEMNDYLHHLNTNHTLYAAVKKAEQD 136


>At2g18640.1 68415.m02171 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to
           gi:1944371; contains GB:L22347
          Length = 372

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 523 VVGGEYPHKLSKICNFAQCVGKLIKYLD 440
           V+GG    ++ K+ NFA+C+G L + +D
Sbjct: 271 VIGGGTEKEIEKVRNFARCIGLLFQVVD 298


>At3g42390.1 68416.m04383 hypothetical protein 
          Length = 126

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 305 LKERTGLFNKPELTTFEGFYTLKDQAIEATDR 400
           LKE   +F +PE+  F+  +TL D+++  T +
Sbjct: 50  LKEEENVFEQPEVVVFDDSFTLVDESVIFTSK 81


>At5g65070.1 68418.m08185 MADS-box protein (MAF4) contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); contains Pfam
           profile PF01486: K-box region
          Length = 200

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
 Frame = +2

Query: 308 KERTGLFNKPELTTFEGFYTLKDQAIEATDRLIEXATNSPTRPMVEIFD-ELSDTLCKVA 484
           K R GL  K    +     ++    I AT RL   ++      ++  ++ E +D L K  
Sbjct: 23  KRRNGLMEKARQLSILCESSVALIIISATGRLYSFSSGDSMAKILSRYELEQADDL-KTL 81

Query: 485 DLAEFVRILTPNHISHELLKKPVSALVELSKS*TRTKACTKL*RSQLR 628
           DL E     T N++SH+ L + +   +E +KS   +  C K    QL+
Sbjct: 82  DLEE----KTLNYLSHKELLETIQCKIEEAKSDNVSIDCLKSLEEQLK 125


>At5g19260.1 68418.m02293 expressed protein various predicted
           proteins
          Length = 288

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 335 PELTTFEGFYTLKDQAIEATDRLIEXATNSPTR 433
           P LTT  GF  ++ +      RL+  ATN+P R
Sbjct: 168 PPLTTMRGFQCIQMRPHRENGRLVMTATNAPPR 200


>At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 946

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +2

Query: 332 KPELTTF----EGFYTLKDQAIEATDRLIEXATNSPTRPMVEIFDELSDTLCKVADLAEF 499
           +P + T+    +GF   K   +E   +L++  +     P   ++D L D LCKV  L E 
Sbjct: 595 RPNVVTYGALLDGF--CKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEA 652

Query: 500 VRILT 514
             + T
Sbjct: 653 QEVKT 657


>At5g59250.1 68418.m07425 sugar transporter family protein similar
           to D-xylose-H+ symporter from Lactobacillus brevis
           GI:2895856, sugar-porter family protein 2 [Arabidopsis
           thaliana] GI:14585701; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 558

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 251 TLATAFNTRPNSRPIFDSLKERTGLFNKPELTT 349
           T  + F +RP+S  +  SLKERT   +KP L T
Sbjct: 28  TFCSCFKSRPDSSYL--SLKERTCFVSKPGLVT 58


>At1g37020.1 68414.m04616 Ulp1 protease family protein
          Length = 611

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 502 EDTHPQPHFARAAEEACISISGVVEKLNTHKGLYEALKKSVENG 633
           EDT   PH  RA+E   I +S + +++         +K+ + +G
Sbjct: 337 EDTFSNPHVQRASEAMAIVLSSIEDQIKNLNDGKSTVKRIITDG 380


>At5g54980.1 68418.m06847 integral membrane family protein similar
           to unknown protein (gb|AAD50013.1); contains TIGRFAM
           TIGR01569 : plant integral membrane protein TIGR01569;
           contains Pfam PF04535 : Domain of unknown function
           (DUF588)
          Length = 194

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 432 VLWSRYLMSFPTHCAKLQILLSL 500
           V WS    S+P +C+KL I L L
Sbjct: 137 VTWSEMCSSYPHYCSKLTIALGL 159


>At4g00460.1 68417.m00063 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 473

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -2

Query: 385 DSLVLKRVEAFKSCELWFIEEAS 317
           DS++++ +++F++ E W+ EE S
Sbjct: 215 DSMLMEALDSFQNTEFWYAEEGS 237


>At2g18620.1 68415.m02168 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to gi:413730
           to geranylgeranyl pyrophosphate synthase, chloroplast
           precursor GB:P34802 from [Arabidopsis thaliana]
           synonymous with farnesyltranstransferase
          Length = 347

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 523 VVGGEYPHKLSKICNFAQCVGKLIKYLD 440
           +VGG    ++ K+  FA+C+G L + +D
Sbjct: 246 IVGGGSDEEVEKLRRFARCIGLLFQVVD 273


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,570,259
Number of Sequences: 28952
Number of extensions: 269786
Number of successful extensions: 699
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)