Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0785
(454 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 51 1e-07
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 39 4e-04
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 39 4e-04
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 37 0.001
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 35 0.005
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 31 0.062
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 31 0.11
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom... 30 0.19
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 29 0.44
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 28 0.77
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 27 1.8
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 27 1.8
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 26 3.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.1
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 4.1
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 5.4
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 5.4
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 25 7.2
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 50.8 bits (116), Expect = 1e-07
Identities = 29/67 (43%), Positives = 38/67 (56%)
Frame = +1
Query: 253 MGNFKLTNNALVLVMGSKEEDVPAAPVEQTRFVEDMNEAELATAMDMPEGLINLGNTCYM 432
+G+ + NA +L+MG+ E A P+ VE E + P GLINLGNTCYM
Sbjct: 56 LGSVGIKPNATLLMMGTAGELPTAMPIPAVESVEQ----EESEDDGYPSGLINLGNTCYM 111
Query: 433 NATVQCL 453
N+TVQ L
Sbjct: 112 NSTVQML 118
Score = 44.0 bits (99), Expect = 1e-05
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +2
Query: 92 VSVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPEXQKVVCKGVTLRDD 250
+ + ++W + Y D+E+ ++ K Q+++LT V PE QKV+ KG L+DD
Sbjct: 2 IPIAIRWQGKKY-DLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDD 53
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 38.7 bits (86), Expect = 4e-04
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +1
Query: 394 PEGLINLGNTCYMNATVQCL 453
P GL NLGNTCYMN +QCL
Sbjct: 71 PIGLTNLGNTCYMNCVLQCL 90
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 38.7 bits (86), Expect = 4e-04
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 307 EEDVPAAPVEQTRFVEDMNEAELATAMDMPEGLINLGNTCYMNATVQCL 453
+ED P + F E+ E M GL+NLGNTC+MN+ +Q +
Sbjct: 95 DEDPAFIPPARILFPEEKLSMEWDNIMPNAPGLVNLGNTCFMNSVLQLM 143
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 37.1 bits (82), Expect = 0.001
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 400 GLINLGNTCYMNATVQCL 453
GL NLGNTCYMN+ +QCL
Sbjct: 312 GLSNLGNTCYMNSALQCL 329
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 35.1 bits (77), Expect = 0.005
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 400 GLINLGNTCYMNATVQCL 453
GL NLGN+CYMN+ +QC+
Sbjct: 280 GLYNLGNSCYMNSALQCM 297
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 31.5 bits (68), Expect = 0.062
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 379 TAMDMPEGLINLGNTCYMNATVQ 447
+++D P GL N GN CY+N+ +Q
Sbjct: 608 SSLDTPIGLENTGNLCYLNSLIQ 630
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 30.7 bits (66), Expect = 0.11
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 394 PEGLINLGNTCYMNATVQCL 453
P G IN GN C+MN+ +Q L
Sbjct: 132 PRGFINTGNICFMNSILQAL 151
>SPBC428.13c |mob1||protein kinase regulator
Mob1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 29.9 bits (64), Expect = 0.19
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 163 YRFIVCIHLHIWVHFLAPFYLH*NVRHFGLFC 68
Y I C H H+ V YL+ + +HF FC
Sbjct: 157 YAHIYCSHFHVMVAMELESYLNTSFKHFVFFC 188
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 28.7 bits (61), Expect = 0.44
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 400 GLINLGNTCYMNATVQCL 453
GL NLGN+CY+ +T+Q L
Sbjct: 301 GLKNLGNSCYLASTMQSL 318
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 27.9 bits (59), Expect = 0.77
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 400 GLINLGNTCYMNATVQCL 453
GL NLG TC+ N+T+Q L
Sbjct: 209 GLKNLGATCFFNSTLQVL 226
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 400 GLINLGNTCYMNATVQCL 453
GL N G TCYMN+ +Q L
Sbjct: 231 GLKNQGATCYMNSLLQSL 248
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 400 GLINLGNTCYMNATVQCL 453
GL N G TCYMN+ +Q L
Sbjct: 214 GLKNQGATCYMNSLLQSL 231
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 379 TAMDMPEGLINLGNTCYMNATVQCL 453
T D GL N GNTCY+++ + L
Sbjct: 35 TLTDRFYGLTNYGNTCYVSSVLVSL 59
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3
Query: 335 STGAAGTSSSLLPMTST 285
ST + GTSSS LP TST
Sbjct: 321 STSSTGTSSSPLPSTST 337
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 4.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 341 HVLSKT*MKLNWLQPWICQRVSSTWVTL 424
HV ++ +K L P C+++S WV L
Sbjct: 401 HVTYRSLLKAYCLLPSTCEQISQAWVNL 428
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 208 LWLDPCQCKYLRLEQYRFIVCIHLHIW 128
L LD CK + Q F +C+H H+W
Sbjct: 2062 LSLDQIPCKQCGVHQ-DFDLCLHEHLW 2087
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.0 bits (52), Expect = 5.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 298 GSKEEDVPAAPVEQTRFVEDMNEAELATAMD 390
G P APV+ + +ED+N+ + MD
Sbjct: 488 GYYSSGAPGAPVQPQKPIEDLNKIPINQGMD 518
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 24.6 bits (51), Expect = 7.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 303 TAHDKY*GVIRQFKIAHVSSRN 238
T DK G+IR +IA++ S+N
Sbjct: 865 TCMDKKAGIIRDARIAYIKSKN 886
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,644
Number of Sequences: 5004
Number of extensions: 38896
Number of successful extensions: 99
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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