BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0785 (454 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical p... 64 3e-11 Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical pr... 64 3e-11 U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine tr... 64 3e-11 AL132898-1|CAC14405.1| 357|Caenorhabditis elegans Hypothetical ... 37 0.008 AC091125-6|AAK27886.3| 474|Caenorhabditis elegans Hypothetical ... 34 0.056 U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def... 33 0.074 AL132902-8|CAC14423.2| 699|Caenorhabditis elegans Hypothetical ... 33 0.074 U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def... 33 0.097 AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t... 33 0.097 Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical pr... 32 0.17 Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 32 0.17 Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 31 0.30 AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical ... 31 0.30 Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 31 0.52 Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 31 0.52 U88180-7|AAB42297.2| 789|Caenorhabditis elegans Hypothetical pr... 30 0.91 U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical pr... 29 2.1 AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylat... 29 2.1 Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical pr... 28 3.7 Z29645-1|CAA82753.1| 522|Caenorhabditis elegans kinesin light c... 28 3.7 Z29644-1|CAA82752.1| 540|Caenorhabditis elegans kinesin light c... 28 3.7 U55369-14|AAN84862.1| 540|Caenorhabditis elegans Kinesin light ... 28 3.7 U55369-13|AAN84863.1| 501|Caenorhabditis elegans Kinesin light ... 28 3.7 U55369-12|AAK52182.1| 522|Caenorhabditis elegans Kinesin light ... 28 3.7 U55369-11|AAT68902.1| 531|Caenorhabditis elegans Kinesin light ... 28 3.7 AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical... 28 3.7 AB095019-1|BAC22611.1| 822|Caenorhabditis elegans ubiquitin-spe... 28 3.7 Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical p... 27 4.8 Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 27 6.4 Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 6.4 Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 6.4 Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 6.4 Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 6.4 M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 27 6.4 Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr... 27 8.4 Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr... 27 8.4 AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical ... 27 8.4 >Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical protein C13B4.2 protein. Length = 489 Score = 64.5 bits (150), Expect = 3e-11 Identities = 33/53 (62%), Positives = 37/53 (69%) Frame = +2 Query: 98 VKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPEXQKVVCKGVTLRDDTW 256 V VKW KE Y VEV+T P++FKAQ+FALT V PE QKVV G TL DD W Sbjct: 4 VNVKWQKEKYV-VEVDTSAPPMVFKAQLFALTQVVPERQKVVIMGRTLGDDDW 55 Score = 40.7 bits (91), Expect = 5e-04 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Frame = +1 Query: 268 LTNNALVLVMGSKEEDVPAAP-VEQTRFVEDMNEAELATAMDMPEGLINLGNTCYMNATV 444 + N +++MGS E +P P V + + +AE +A+ P GL NLGNTCY N+ V Sbjct: 60 IKENMTIMMMGSVGE-IPKPPTVLEKKQANRDKQAEEISAL-YPCGLANLGNTCYFNSCV 117 Query: 445 QCL 453 Q L Sbjct: 118 QML 120 >Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical protein C13B4.2 protein. Length = 489 Score = 64.5 bits (150), Expect = 3e-11 Identities = 33/53 (62%), Positives = 37/53 (69%) Frame = +2 Query: 98 VKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPEXQKVVCKGVTLRDDTW 256 V VKW KE Y VEV+T P++FKAQ+FALT V PE QKVV G TL DD W Sbjct: 4 VNVKWQKEKYV-VEVDTSAPPMVFKAQLFALTQVVPERQKVVIMGRTLGDDDW 55 Score = 40.7 bits (91), Expect = 5e-04 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Frame = +1 Query: 268 LTNNALVLVMGSKEEDVPAAP-VEQTRFVEDMNEAELATAMDMPEGLINLGNTCYMNATV 444 + N +++MGS E +P P V + + +AE +A+ P GL NLGNTCY N+ V Sbjct: 60 IKENMTIMMMGSVGE-IPKPPTVLEKKQANRDKQAEEISAL-YPCGLANLGNTCYFNSCV 117 Query: 445 QCL 453 Q L Sbjct: 118 QML 120 >U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine transglycosylase protein. Length = 489 Score = 64.5 bits (150), Expect = 3e-11 Identities = 33/53 (62%), Positives = 37/53 (69%) Frame = +2 Query: 98 VKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPEXQKVVCKGVTLRDDTW 256 V VKW KE Y VEV+T P++FKAQ+FALT V PE QKVV G TL DD W Sbjct: 4 VNVKWQKEKYV-VEVDTSAPPMVFKAQLFALTQVVPERQKVVIMGRTLGDDDW 55 Score = 40.7 bits (91), Expect = 5e-04 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Frame = +1 Query: 268 LTNNALVLVMGSKEEDVPAAP-VEQTRFVEDMNEAELATAMDMPEGLINLGNTCYMNATV 444 + N +++MGS E +P P V + + +AE +A+ P GL NLGNTCY N+ V Sbjct: 60 IKENMTIMMMGSVGE-IPKPPTVLEKKQANRDKQAEEISAL-YPCGLANLGNTCYFNSCV 117 Query: 445 QCL 453 Q L Sbjct: 118 QML 120 >AL132898-1|CAC14405.1| 357|Caenorhabditis elegans Hypothetical protein Y59A8B.2 protein. Length = 357 Score = 36.7 bits (81), Expect = 0.008 Identities = 13/18 (72%), Positives = 17/18 (94%) Frame = +1 Query: 400 GLINLGNTCYMNATVQCL 453 GL N+GNTC+M+AT+QCL Sbjct: 25 GLFNMGNTCFMSATLQCL 42 >AC091125-6|AAK27886.3| 474|Caenorhabditis elegans Hypothetical protein Y67D2.2 protein. Length = 474 Score = 33.9 bits (74), Expect = 0.056 Identities = 17/36 (47%), Positives = 23/36 (63%) Frame = +1 Query: 346 FVEDMNEAELATAMDMPEGLINLGNTCYMNATVQCL 453 F+ N E +++ +P GL N GNTCYMNA +Q L Sbjct: 29 FLTSRNGEEASSSRLVP-GLANQGNTCYMNALLQGL 63 >U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect protein 3, isoformb protein. Length = 1178 Score = 33.5 bits (73), Expect = 0.074 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%) Frame = +1 Query: 361 NEAELATAMDMPE--GLINLGNTCYMNATVQCL 453 + A+L+ + P GL+N GN CY NA +QCL Sbjct: 556 SNAQLSDSSGRPGAVGLVNYGNFCYRNAGIQCL 588 >AL132902-8|CAC14423.2| 699|Caenorhabditis elegans Hypothetical protein Y71A12B.9 protein. Length = 699 Score = 33.5 bits (73), Expect = 0.074 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +1 Query: 394 PEGLINLGNTCYMNATVQCL 453 P G+ N+GNTC+MNA +Q L Sbjct: 377 PRGMRNVGNTCFMNAVLQAL 396 >U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect protein 3, isoforma protein. Length = 1175 Score = 33.1 bits (72), Expect = 0.097 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +1 Query: 400 GLINLGNTCYMNATVQCL 453 GL+N GN CY NA +QCL Sbjct: 568 GLVNYGNFCYRNAGIQCL 585 >AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-terminal hydrolase protein. Length = 1175 Score = 33.1 bits (72), Expect = 0.097 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +1 Query: 400 GLINLGNTCYMNATVQCL 453 GL+N GN CY NA +QCL Sbjct: 568 GLVNYGNFCYRNAGIQCL 585 >Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical protein K09A9.4 protein. Length = 716 Score = 32.3 bits (70), Expect = 0.17 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +1 Query: 400 GLINLGNTCYMNATVQCL 453 G +N GNTCYMNA +Q L Sbjct: 183 GYLNFGNTCYMNAVLQLL 200 >Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical protein R10E11.3a protein. Length = 426 Score = 32.3 bits (70), Expect = 0.17 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +1 Query: 400 GLINLGNTCYMNATVQCL 453 GL+N GNTCY N+ +Q L Sbjct: 28 GLVNFGNTCYCNSVIQAL 45 >Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical protein F07A11.4 protein. Length = 1095 Score = 31.5 bits (68), Expect = 0.30 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = +1 Query: 400 GLINLGNTCYMNATVQCL 453 GL N+GNTC+MNA +Q L Sbjct: 424 GLRNIGNTCFMNAVLQML 441 >AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical protein H34C03.2 protein. Length = 900 Score = 31.5 bits (68), Expect = 0.30 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +1 Query: 400 GLINLGNTCYMNATVQCL 453 GL NLGNTC+M + QCL Sbjct: 276 GLSNLGNTCFMASAFQCL 293 >Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical protein F30A10.10 protein. Length = 1262 Score = 30.7 bits (66), Expect = 0.52 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +1 Query: 388 DMPEGLINLGNTCYMNATVQ 447 D P GLIN GN CY+N+ +Q Sbjct: 105 DQPAGLINGGNFCYVNSFLQ 124 >Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical protein F30A10.10 protein. Length = 1262 Score = 30.7 bits (66), Expect = 0.52 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +1 Query: 388 DMPEGLINLGNTCYMNATVQ 447 D P GLIN GN CY+N+ +Q Sbjct: 105 DQPAGLINGGNFCYVNSFLQ 124 >U88180-7|AAB42297.2| 789|Caenorhabditis elegans Hypothetical protein T27A3.2 protein. Length = 789 Score = 29.9 bits (64), Expect = 0.91 Identities = 10/18 (55%), Positives = 15/18 (83%) Frame = +1 Query: 400 GLINLGNTCYMNATVQCL 453 GL+N G++CYMN+ +Q L Sbjct: 320 GLVNTGSSCYMNSVLQAL 337 >U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical protein C04E6.5 protein. Length = 515 Score = 28.7 bits (61), Expect = 2.1 Identities = 9/17 (52%), Positives = 15/17 (88%) Frame = +1 Query: 403 LINLGNTCYMNATVQCL 453 L+N GN+C++N+T+Q L Sbjct: 147 LVNTGNSCFLNSTMQAL 163 >AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylating with usp/ubp andotu domains protein 2 protein. Length = 551 Score = 28.7 bits (61), Expect = 2.1 Identities = 9/22 (40%), Positives = 17/22 (77%) Frame = +1 Query: 388 DMPEGLINLGNTCYMNATVQCL 453 ++ + L+N GN+CY N+T+Q + Sbjct: 31 ELRKRLVNTGNSCYYNSTLQAM 52 >Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical protein F38B7.5 protein. Length = 822 Score = 27.9 bits (59), Expect = 3.7 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +1 Query: 403 LINLGNTCYMNATVQCL 453 L+N GN+CY N+T+Q + Sbjct: 216 LVNTGNSCYYNSTMQAV 232 >Z29645-1|CAA82753.1| 522|Caenorhabditis elegans kinesin light chain (isoform 2) protein. Length = 522 Score = 27.9 bits (59), Expect = 3.7 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +2 Query: 299 AVKRKTCQQHQWNRHVLSKT*MKLNWLQPWICQ 397 A +R+ CQ++ W R LS T +KL + + Q Sbjct: 113 AQRRRLCQENAWLRDELSSTQIKLQQSEQMVAQ 145 >Z29644-1|CAA82752.1| 540|Caenorhabditis elegans kinesin light chain (isoform 1) protein. Length = 540 Score = 27.9 bits (59), Expect = 3.7 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +2 Query: 299 AVKRKTCQQHQWNRHVLSKT*MKLNWLQPWICQ 397 A +R+ CQ++ W R LS T +KL + + Q Sbjct: 92 AQRRRLCQENAWLRDELSSTQIKLQQSEQMVAQ 124 >U55369-14|AAN84862.1| 540|Caenorhabditis elegans Kinesin light chain protein 2,isoform b protein. Length = 540 Score = 27.9 bits (59), Expect = 3.7 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +2 Query: 299 AVKRKTCQQHQWNRHVLSKT*MKLNWLQPWICQ 397 A +R+ CQ++ W R LS T +KL + + Q Sbjct: 92 AQRRRLCQENAWLRDELSSTQIKLQQSEQMVAQ 124 >U55369-13|AAN84863.1| 501|Caenorhabditis elegans Kinesin light chain protein 2,isoform c protein. Length = 501 Score = 27.9 bits (59), Expect = 3.7 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +2 Query: 299 AVKRKTCQQHQWNRHVLSKT*MKLNWLQPWICQ 397 A +R+ CQ++ W R LS T +KL + + Q Sbjct: 92 AQRRRLCQENAWLRDELSSTQIKLQQSEQMVAQ 124 >U55369-12|AAK52182.1| 522|Caenorhabditis elegans Kinesin light chain protein 2,isoform a protein. Length = 522 Score = 27.9 bits (59), Expect = 3.7 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +2 Query: 299 AVKRKTCQQHQWNRHVLSKT*MKLNWLQPWICQ 397 A +R+ CQ++ W R LS T +KL + + Q Sbjct: 113 AQRRRLCQENAWLRDELSSTQIKLQQSEQMVAQ 145 >U55369-11|AAT68902.1| 531|Caenorhabditis elegans Kinesin light chain protein 2,isoform d protein. Length = 531 Score = 27.9 bits (59), Expect = 3.7 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +2 Query: 299 AVKRKTCQQHQWNRHVLSKT*MKLNWLQPWICQ 397 A +R+ CQ++ W R LS T +KL + + Q Sbjct: 92 AQRRRLCQENAWLRDELSSTQIKLQQSEQMVAQ 124 >AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical protein Y106G6H.12 protein. Length = 975 Score = 27.9 bits (59), Expect = 3.7 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +1 Query: 403 LINLGNTCYMNATVQCL 453 L N GN+CY N+T+Q L Sbjct: 284 LYNTGNSCYFNSTMQAL 300 >AB095019-1|BAC22611.1| 822|Caenorhabditis elegans ubiquitin-specific protease protein. Length = 822 Score = 27.9 bits (59), Expect = 3.7 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +1 Query: 403 LINLGNTCYMNATVQCL 453 L+N GN+CY N+T+Q + Sbjct: 216 LVNTGNSCYYNSTMQAV 232 >Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical protein R107.6 protein. Length = 1020 Score = 27.5 bits (58), Expect = 4.8 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = +2 Query: 197 VQPEXQKVVCKGVTLRDDTWAILN*RITP*YLSWAVKRKTCQQHQWNRHV 346 + P +KV+C L + ++ L P Y WA K Q H ++HV Sbjct: 643 ITPHGEKVLCSLFALNNADFSALFNDFNPDYRDWAY--KVLQSHGHDQHV 690 >Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein F29D11.1 protein. Length = 4753 Score = 27.1 bits (57), Expect = 6.4 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +3 Query: 18 SXSVNTALSIISEKENVQNSPKCLTFQ*R*NGARKCT 128 S SVNTA S+ +E + N KC+ + + +G+ C+ Sbjct: 43 SASVNTASSVCNENDFRCNDGKCIRTEWKCDGSGDCS 79 >Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical protein T24B8.7b protein. Length = 2923 Score = 27.1 bits (57), Expect = 6.4 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +1 Query: 400 GLINLGNTCYMNATVQCL 453 G+ N G TCYMNA +Q L Sbjct: 1768 GMKNDGGTCYMNAMIQQL 1785 >Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical protein T24B8.7a protein. Length = 2920 Score = 27.1 bits (57), Expect = 6.4 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +1 Query: 400 GLINLGNTCYMNATVQCL 453 G+ N G TCYMNA +Q L Sbjct: 1765 GMKNDGGTCYMNAMIQQL 1782 >Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical protein T24B8.7b protein. Length = 2923 Score = 27.1 bits (57), Expect = 6.4 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +1 Query: 400 GLINLGNTCYMNATVQCL 453 G+ N G TCYMNA +Q L Sbjct: 1768 GMKNDGGTCYMNAMIQQL 1785 >Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical protein T24B8.7a protein. Length = 2920 Score = 27.1 bits (57), Expect = 6.4 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +1 Query: 400 GLINLGNTCYMNATVQCL 453 G+ N G TCYMNA +Q L Sbjct: 1765 GMKNDGGTCYMNAMIQQL 1782 >M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related protein protein. Length = 4753 Score = 27.1 bits (57), Expect = 6.4 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +3 Query: 18 SXSVNTALSIISEKENVQNSPKCLTFQ*R*NGARKCT 128 S SVNTA S+ +E + N KC+ + + +G+ C+ Sbjct: 43 SASVNTASSVCNENDFRCNDGKCIRTEWKCDGSGDCS 79 >Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein F52B5.3 protein. Length = 1425 Score = 26.6 bits (56), Expect = 8.4 Identities = 12/41 (29%), Positives = 17/41 (41%) Frame = +2 Query: 134 VEVNTDDEPVLFKAQIFALTGVQPEXQKVVCKGVTLRDDTW 256 +E D V + QI A+TG QP K ++ W Sbjct: 359 IESRAFDVKVFYLDQILAMTGYQPPESKAFFSTAEYEEEDW 399 >Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical protein T05H10.1 protein. Length = 1326 Score = 26.6 bits (56), Expect = 8.4 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +1 Query: 400 GLINLGNTCYMNATVQCL 453 GL+N TCY+N+ VQ L Sbjct: 89 GLVNQAMTCYLNSLVQSL 106 >AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical protein F52G3.3 protein. Length = 807 Score = 26.6 bits (56), Expect = 8.4 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +1 Query: 316 VPAAPVEQTRFVEDMNEAELATAMDMPEGLINLGNTCYMNATVQCL 453 VPA PVE+ +F E + E L + + C+MNA + L Sbjct: 541 VPAEPVEEIQFDEPIEEQTLMPFLFLDNSFGQ--QNCFMNALLNML 584 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,784,824 Number of Sequences: 27780 Number of extensions: 228123 Number of successful extensions: 563 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 546 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 563 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 799252350 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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