Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0783
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887... 31 0.84
03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772... 30 2.0
01_01_1022 - 8064032-8064657,8064823-8064893,8065926-8066047,806... 29 3.4
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963... 29 4.5
12_02_0878 + 23952594-23952802,23954846-23955083,23955122-239552... 28 6.0
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 28 6.0
03_02_0097 + 5602912-5603293,5604599-5604676,5604935-5604963 28 6.0
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 7.9
>01_07_0041 +
40688242-40688278,40688396-40688502,40688612-40688707,
40688859-40688915,40689033-40689194,40689310-40689394,
40689648-40689738,40689813-40689977,40690121-40690240,
40690330-40690402,40690482-40690650,40690741-40691651,
40691839-40691931,40692065-40692255,40692343-40692455,
40692757-40692783,40693915-40693949
Length = 843
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 187 LNYSWRYKNSVRKVVHVIPSAISISQTPPQCALPAALLKNPSSVPNVQPASTQKP 351
L W +++ + V P I + +PP LP + +K P PN PAS + P
Sbjct: 330 LKVRWDEPSTIPRPDRVSPWKIEPASSPPVNPLPLSRVKRPR--PNAPPASPESP 382
>03_02_0349 -
7722461-7723069,7723494-7724221,7724281-7724641,
7724751-7725072,7725183-7725661,7726157-7726430,
7726598-7726884,7726966-7727388,7727545-7727890,
7728011-7728328,7729817-7731081
Length = 1803
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 190 NYSWRYKNSVRKVVHVIPSAISISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSIS 369
N SWR K + K+ H S + Q PP A A P+S +S+Q S+S
Sbjct: 33 NASWRNK-AHSKLSHTAKSILDRLQNPPPPAAAAQAPSTPTSPTTPTSSSSQPGPLRSLS 91
Query: 370 FDESQ 384
+S+
Sbjct: 92 LADSE 96
>01_01_1022 -
8064032-8064657,8064823-8064893,8065926-8066047,
8066540-8066689,8067153-8067179,8067485-8067552,
8067679-8067874
Length = 419
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 286 PAALLKNPSSVPNVQPASTQKPRSNSISFDESQETFSMDL 405
P A P+ P A QKP S+S++E + FS+ +
Sbjct: 19 PVAAAAVPTPAPPASEAQPQKPTRVSLSYEEISKLFSLPI 58
>03_02_0865 -
11895257-11895340,11896004-11896069,11896297-11896355,
11896470-11896557,11897158-11897328,11897406-11897564,
11897653-11897835,11897931-11898012,11898753-11898959,
11899099-11899170,11901948-11902055,11902460-11902506
Length = 441
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 265 TPPQCALPAALLKNPSSVPNVQPASTQKPRSNSISFDESQ 384
TPP LP+ + P P QP++ KP +S DES+
Sbjct: 192 TPP---LPSQVPAPPPPPPPPQPSAANKPHLTDLSSDESE 228
>12_02_0878 +
23952594-23952802,23954846-23955083,23955122-23955238,
23955719-23955818,23956168-23956196,23956477-23956704
Length = 306
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 241 PSAISISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSISFDESQE 387
P+++ + A P NP +P V PA+ P+S+S + +ES+E
Sbjct: 30 PASLPLGPPAAASAKPLVAAANPPLLPVVAPAAA-APKSSSGAVEESKE 77
>05_03_0359 -
12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +2
Query: 59 IMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFML 238
+++AS H+ + +R + + A+ P Y S GG +Y T T V + ++
Sbjct: 707 LLNASDFRENKIHTGWLDTR-IAMRVQAERPPWYISVVGGALYKTVTANTATVSD--YVG 763
Query: 239 SLRQSRFPKRH 271
L + + P +H
Sbjct: 764 YLTKGQIPPKH 774
>03_02_0097 + 5602912-5603293,5604599-5604676,5604935-5604963
Length = 162
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 223 KVVHVIPSAISISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNS 363
++V PSA+ S T + A+L + PS +P ++ A ++ PR S
Sbjct: 9 QIVAAPPSAVIASLTHRTFVVVASLPRRPSVIPPLRAALSRSPRHPS 55
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 286 PAALLKNPSSVPNVQPASTQKPRSN 360
P + + P+S P + PAS++KP+ N
Sbjct: 19 PTSAPRLPTSAPPISPASSRKPKPN 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,742,256
Number of Sequences: 37544
Number of extensions: 390649
Number of successful extensions: 1098
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -