Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0783
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47700| Best HMM Match : eIF_4EBP (HMM E-Value=3e-35)                85   7e-17
SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.49 
SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)               31   1.1  
SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)                       30   1.5  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      29   3.5  
SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_13800| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_25735| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)                 28   8.0  
SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)                  28   8.0  

>SB_47700| Best HMM Match : eIF_4EBP (HMM E-Value=3e-35)
          Length = 148

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 39/68 (57%), Positives = 49/68 (72%)
 Frame = +2

Query: 62  MSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLS 241
           M+ +   R +  +++IPSRRV + DP  MP  YS+TPGGTIYSTTPGGTRI+YER F+L 
Sbjct: 1   MNGTQAERGSPLARAIPSRRVPVHDPNHMPSDYSTTPGGTIYSTTPGGTRIIYERKFLLE 60

Query: 242 LRQSRFPK 265
           LR S   K
Sbjct: 61  LRNSPLAK 68


>SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 515 LFVKLARAKHNKKTCLTGHHFLFRSLVGAVEVNLIDSDIIIVFVGLLPNVSW 670
           LFVK+ R   +   C +GH           EV+ I+S+I++   GLL +V+W
Sbjct: 727 LFVKIVRII-SSHFCPSGHAINLNVANNTQEVHQINSEILLTSGGLLTSVAW 777


>SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)
          Length = 572

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = +2

Query: 35  KLTPRKFLIMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRI 214
           ++T  +  + SAS      T  QS+P     +T P Q+  +  STP  T+Y  T  G  I
Sbjct: 423 QVTGPQIKLPSASGSRHHPTTPQSLPVDMQQVTPP-QVNPITISTPSSTLYDCTYCGDNI 481

Query: 215 VYERSFMLSLRQSRFPKRH 271
             + +      Q  F +RH
Sbjct: 482 TLKSNL-----QRHFKRRH 495


>SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)
          Length = 695

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +2

Query: 224 RSFMLSLRQSRFPKRHRNVHFPQPY*RIRLRYPTCSRPAHKNLDLTRYHSTSRRKPS 394
           R  M+ L   +    +R V     Y ++RL YP+ S P  K+  LT Y STS   P+
Sbjct: 109 RPTMVRLTYRKVRLTYRKVRLT--YRKVRLTYPSFSSPNGKDGGLTSYISTSFSPPN 163


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 107  IPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERS 229
            +PS  +++  P+    VYS  P G I   +P G +IVY  S
Sbjct: 1125 LPSSEIIVYSPSGEKIVYS--PSGEIIVYSPSGKKIVYSPS 1163


>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = +3

Query: 117  GGS*SRIPLKCLMSIPAHRAEPSTQLLLEVQE*CTKGRSCYPFGNLDFPNATAMCTSRSP 296
            GG+  R+PL+   S P+     S  +   V      GR CYP+G          C SR  
Sbjct: 1546 GGTAERLPLR--QSAPSR----SMAITSSVDRPSNDGRQCYPWGRSPVGQHPRRCASRDK 1599

Query: 297  TEESVFGTQR 326
            T     G ++
Sbjct: 1600 THGERHGYRK 1609


>SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 536

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +2

Query: 140 AQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSRFPKRHRNVHFPQPY*RIRLRY 319
           + +P+V SS P G   S+ P G+ +   R  +   + + FP R     F  PY R+ L Y
Sbjct: 187 SSLPEVLSSLPEGL--SSLPEGS-LFPTRGSLFPNQGALFPTRG----FSLPYPRVSLPY 239

Query: 320 PTCSRP 337
           P  S P
Sbjct: 240 PRVSLP 245


>SB_13800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 557 MFFCCV*LWLTSQTAHNV*KTEQAKHSQACGGKPY-LTITGFKY 429
           +F+ C  LW   QTAH V + ++ K+   C  + + L I+ F Y
Sbjct: 3   LFYAC--LWCFRQTAHRVIRFQKKKNCAPCEDRTHDLQISRFDY 44


>SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1879

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 461  CHRKLANVSLALSFRRCGLFV 523
            CH+ L NVS+ L+  RC LF+
Sbjct: 1028 CHKILQNVSILLNADRCSLFL 1048


>SB_25735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -3

Query: 383 CDSSNDIELDRGFCVLAGCTLGTEDGFFSRAAGSAHCGGVW 261
           C  ++ + ++RG+ + +  T  + DG ++ +AG  + G  W
Sbjct: 202 CTCASSLGVERGYILDSQMTSSSNDGAYTASAGRLYGGSSW 242


>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 317  YPTCSRPAHKNLDLTRYHSTSRRKPSAWISKLVI 418
            Y T   P     DLT +HS S R PS ++ ++V+
Sbjct: 1410 YLTTPEPLGTISDLTVWHSDSGRSPSWYLRRIVV 1443


>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
          Length = 942

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 229 VHVIPSAISISQTPPQCALPAALLKNPSSVPNVQP---ASTQKPRSNS 363
           V+  P+A +   TPP  A P   L    + P++QP    ST  P+S S
Sbjct: 245 VNTPPNAQAQQMTPPSSAAPPQSLPGLQTSPSLQPPSQRSTPSPQSMS 292


>SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)
          Length = 165

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 245 RQSRFPKRHRNVHFPQPY*RIRLRYPTCSRPAHKNLDLTRYHSTS 379
           R +  P+ H N   PQ       ++   ++P H+N    RYH+T+
Sbjct: 8   RDTTIPQ-HNNTAIPQHRTTKTPQHQNTAKPQHRNTTTPRYHNTA 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,648,923
Number of Sequences: 59808
Number of extensions: 452163
Number of successful extensions: 1159
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)