Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0783
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 34 0.11
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 34 0.11
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 34 0.11
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF016422-1|AAG24175.1| 335|Caenorhabditis elegans Seven tm rece... 28 5.4
AF003384-6|AAB54238.2| 451|Caenorhabditis elegans Coenzyme q (u... 28 5.4
U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical pr... 28 7.1
U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical pr... 28 7.1
AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical ... 28 7.1
AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 211 NSVRKVVHVIPSAISISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSIS 369
N+V + V + PS S S PP+ + + P+ VP PA+ +P SN+ S
Sbjct: 380 NAVPQKVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVPVPTPAAAPRPMSNNNS 432
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 211 NSVRKVVHVIPSAISISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSIS 369
N+V + V + PS S S PP+ + + P+ VP PA+ +P SN+ S
Sbjct: 380 NAVPQKVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVPVPTPAAAPRPMSNNNS 432
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 211 NSVRKVVHVIPSAISISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSIS 369
N+V + V + PS S S PP+ + + P+ VP PA+ +P SN+ S
Sbjct: 380 NAVPQKVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVPVPTPAAAPRPMSNNNS 432
>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
protein R09H10.5 protein.
Length = 1603
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +1
Query: 181 HLLNYSWRYKNSVRKVVHVIPSAISI-SQTPPQCALPAALLKNPSSVPNVQP--ASTQKP 351
HLL Y+ +N+ + + + I + S TP Q ++N S+PN+Q +T KP
Sbjct: 396 HLLFYTIGGQNTYVQYYNNVAKNIPVQSDTPTQTTYIMMTVENGESLPNIQDTNGNTLKP 455
Query: 352 RSNSISF 372
S+ F
Sbjct: 456 TSSGRRF 462
>AF016422-1|AAG24175.1| 335|Caenorhabditis elegans Seven tm
receptor protein 238 protein.
Length = 335
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +2
Query: 473 LANVSLALSFRRCGLFVKLARAKHNKKTCLTGHHFLFRSLVGAVEVNLIDSDIIIVFVGL 652
+A+ +++SF +F L+ + +K T LT H FRS+ + +L+ ++ F
Sbjct: 204 IASTLISISFAMIVIFATLSYKEVSKLTELTSHSEKFRSIQLQLLNSLVLQSLVPAFFIQ 263
Query: 653 LPNVSWF 673
LP+ F
Sbjct: 264 LPSFVLF 270
>AF003384-6|AAB54238.2| 451|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 6 protein.
Length = 451
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 1 GD*QVSSVEFCKINTTKVFNNVSVTHREAGHSQPIDSFKEGPDHGSR 141
G V + C + K F + SV +AG S + SFK G +R
Sbjct: 24 GGGMVGNAMACSLGANKSFQSKSVLLLDAGRSPSLASFKPGAPFNNR 70
>U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical
protein T13C2.3a protein.
Length = 431
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/91 (24%), Positives = 37/91 (40%)
Frame = +2
Query: 119 RVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSRFPKRHRNVHFPQPY 298
RV++T P +ST T +TT T + S++P ++ P+P
Sbjct: 310 RVIVTIPPSTTSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLPPQIYRPRPI 369
Query: 299 *RIRLRYPTCSRPAHKNLDLTRYHSTSRRKP 391
+++ R T P + R S SR +P
Sbjct: 370 DQMKRRKQT---PKKCRVAYVRTKSGSRTRP 397
>U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical
protein T13C2.3b protein.
Length = 506
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/91 (24%), Positives = 37/91 (40%)
Frame = +2
Query: 119 RVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSRFPKRHRNVHFPQPY 298
RV++T P +ST T +TT T + S++P ++ P+P
Sbjct: 385 RVIVTIPPSTTSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLPPQIYRPRPI 444
Query: 299 *RIRLRYPTCSRPAHKNLDLTRYHSTSRRKP 391
+++ R T P + R S SR +P
Sbjct: 445 DQMKRRKQT---PKKCRVAYVRTKSGSRTRP 472
>AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical
protein Y106G6D.3 protein.
Length = 555
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 44 PRKFLIMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTP 172
PR I + +A+ + +R V + DP P YS TP
Sbjct: 424 PRSIYIETGKSTYGEASKTSGNNARSVYLADPVSAPKAYSVTP 466
>AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical
protein Y67D2.4 protein.
Length = 313
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 503 RRCGLFVKLARAKHNKKTCLTGHHFLFRS 589
R F++L R + K +CL HFL+R+
Sbjct: 285 RAAKYFIQLYRNRKFKDSCLDNEHFLYRN 313
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,764,795
Number of Sequences: 27780
Number of extensions: 328693
Number of successful extensions: 886
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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