Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0782
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   6.5  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    25   8.6  

>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 318 SGVNHVDDDSGFRQINLGLDLIAAHCFFSS 229
           +G N V DD   R ++LG D  A+  + SS
Sbjct: 322 NGTNFVPDDGQTRFVDLGKDFYASALYHSS 351


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 624 SVRYLINISNNRNQGSYCCRNRILPPET*LXEVVIK 731
           S RYL++I  +       C+N  LPP++ + +   K
Sbjct: 202 SPRYLVSIGKDDEAIQVMCKNAELPPDSDIIQTEYK 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,651
Number of Sequences: 5004
Number of extensions: 62165
Number of successful extensions: 185
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)