BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0782 (744 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_02_0674 - 21745321-21746223,21746229-21747608 37 0.015 05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 30 2.2 02_05_1018 - 33530834-33530926,33531036-33531098,33531193-335312... 29 3.9 08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773... 29 5.2 02_05_0609 - 30335054-30335374,30335491-30335870,30336102-303364... 29 5.2 03_02_0193 + 6312518-6312554,6312948-6313091,6313214-6313368,631... 28 6.8 07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 28 9.0 04_04_0626 - 26686411-26686518,26686876-26686953,26687763-266878... 28 9.0 >12_02_0674 - 21745321-21746223,21746229-21747608 Length = 760 Score = 37.1 bits (82), Expect = 0.015 Identities = 31/101 (30%), Positives = 42/101 (41%) Frame = -2 Query: 383 SETSSRIWKPISGKIPSVRRSNPALTTLTMTPGFDKSILDWISLRRTASSPRSKCKSSCT 204 S S+R +GKIPS R+NP T + P ++ L S + S+P S C+ S Sbjct: 510 STASTRELSTATGKIPSTPRTNPLSTATSKIPSTPRTSLLSSSTSKIPSTP-STCELSTA 568 Query: 203 PGS*PGIQPRSSCHRGSASRMSPLPSRCPRSKRCECT*S*P 81 G P S + + S PS P S T S P Sbjct: 569 TGKIPSTTCTSPLST-ATGKTSSTPSTSPLSTSTSKTSSTP 608 >05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006, 3160134-3160272,3160457-3160605,3161052-3161173, 3161296-3161417,3161779-3162033,3162108-3162271, 3162311-3162489,3162593-3162767,3162916-3163002, 3163144-3163446,3163539-3163594,3163813-3163894, 3163972-3164039,3164779-3164835,3164926-3164991, 3165121-3165192,3167363-3167459 Length = 782 Score = 29.9 bits (64), Expect = 2.2 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Frame = +1 Query: 235 EEAVRRNEIQSKIDLSKPGVIVNVVNAGFDLRTLGILPEIGFQMRDEVSDNRFPRFTLDL 414 EEA+RRN++++ + K GV + G D+ T G + R++ + ++D+ Sbjct: 42 EEALRRNDVKAIVVTGKGGVF----SGGLDINTFGAI------QRNKAEQLKVDYVSIDV 91 Query: 415 HVNTKEK--KYHLNAYNTPEFG 474 NT E K + A N P G Sbjct: 92 MTNTLEAAGKPSVAAINGPALG 113 >02_05_1018 - 33530834-33530926,33531036-33531098,33531193-33531236, 33531973-33532118,33532262-33532281,33532365-33532500, 33532585-33532804,33532905-33533085,33533495-33533518, 33534127-33534341,33534425-33534705,33535987-33536210 Length = 548 Score = 29.1 bits (62), Expect = 3.9 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -3 Query: 568 IYGESLLVGYVTVVSRAITLTEDRKRLPKHSFRTQV 461 IYG ++GY+ + TL++ LPKHSF ++V Sbjct: 389 IYGSFAIIGYLMFGDK--TLSQITLNLPKHSFASKV 422 >08_02_1237 + 25475219-25475916,25476127-25476320,25476407-25477302, 25477416-25477490,25477582-25477689,25477780-25477897, 25478007-25478142,25478228-25478372,25478460-25479080, 25479166-25479597 Length = 1140 Score = 28.7 bits (61), Expect = 5.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 168 GATRLNPGSRTWSTRTLTFTA 230 GATRL+ RTW+T LTF + Sbjct: 697 GATRLSKSWRTWNTPELTFVS 717 >02_05_0609 - 30335054-30335374,30335491-30335870,30336102-30336443, 30336551-30336700,30336781-30336878,30336986-30337045, 30337140-30337211,30337337-30337480,30337584-30337655, 30337767-30337899,30338076-30338181 Length = 625 Score = 28.7 bits (61), Expect = 5.2 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = +1 Query: 184 IPGHEPGVQELLHLLRGEEAVRRNEIQSKIDLSK 285 +PGH P + E++ +L G+ R E + D K Sbjct: 560 LPGHRPRMSEVVRMLEGDGLAERWEASQRADSHK 593 >03_02_0193 + 6312518-6312554,6312948-6313091,6313214-6313368, 6313596-6313871,6313957-6314081,6314234-6314351, 6314663-6314740,6318972-6319059,6319241-6319297, 6319398-6319405 Length = 361 Score = 28.3 bits (60), Expect = 6.8 Identities = 18/51 (35%), Positives = 19/51 (37%) Frame = +2 Query: 230 EEKKQCAAMRSNPRLICRNPESSSTWLTPDSIFVRLVSYLKLASKCVTRSP 382 EE K C + S RLIC S WL D Y L K T P Sbjct: 77 EESKVCTVLTS-ARLICSKYSSMDQWLGSDEYSPDATVYAHLLDKDETTVP 126 >07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988, 27774929-27775110,27775191-27775368,27775453-27775605, 27775993-27776232,27776369-27776449,27776485-27776730, 27777151-27777240,27777536-27777778,27778365-27778529, 27779017-27779080,27779162-27779286,27779383-27779476, 27779647-27779714,27779798-27779989,27780618-27780752, 27780847-27780934,27781014-27781107,27781484-27781547, 27781657-27781708,27781911-27782014,27782099-27782158, 27782687-27782770,27782892-27783125,27783442-27783864, 27784675-27784736,27784867-27785521 Length = 1700 Score = 27.9 bits (59), Expect = 9.0 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = +2 Query: 122 NEKGVETFLKLSLGDRSYAAESRVTNLEYKNSYIYCEEKKQCAAMRSNP 268 NEK + S+GDR SR NL K Y +++Q RS P Sbjct: 19 NEKAEDEAAYESVGDRDVDLNSRQWNLNEKAEDAYHSDEEQYDGGRSGP 67 >04_04_0626 - 26686411-26686518,26686876-26686953,26687763-26687810, 26688012-26688167,26688725-26688795,26689949-26690055, 26690145-26691112 Length = 511 Score = 27.9 bits (59), Expect = 9.0 Identities = 16/57 (28%), Positives = 24/57 (42%) Frame = -2 Query: 263 WISLRRTASSPRSKCKSSCTPGS*PGIQPRSSCHRGSASRMSPLPSRCPRSKRCECT 93 W + + AS+ +KC S TPG+ G S S R+ S K+ C+ Sbjct: 312 WFAGLKFASTSSTKCYSDATPGTVWGCSQVPSSSTSSVDRIDEQLSDFETKKQISCS 368 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,753,315 Number of Sequences: 37544 Number of extensions: 414281 Number of successful extensions: 1117 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1090 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1117 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1968901276 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -