Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0782
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0674 - 21745321-21746223,21746229-21747608 37 0.015
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 30 2.2
02_05_1018 - 33530834-33530926,33531036-33531098,33531193-335312... 29 3.9
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773... 29 5.2
02_05_0609 - 30335054-30335374,30335491-30335870,30336102-303364... 29 5.2
03_02_0193 + 6312518-6312554,6312948-6313091,6313214-6313368,631... 28 6.8
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 28 9.0
04_04_0626 - 26686411-26686518,26686876-26686953,26687763-266878... 28 9.0
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 37.1 bits (82), Expect = 0.015
Identities = 31/101 (30%), Positives = 42/101 (41%)
Frame = -2
Query: 383 SETSSRIWKPISGKIPSVRRSNPALTTLTMTPGFDKSILDWISLRRTASSPRSKCKSSCT 204
S S+R +GKIPS R+NP T + P ++ L S + S+P S C+ S
Sbjct: 510 STASTRELSTATGKIPSTPRTNPLSTATSKIPSTPRTSLLSSSTSKIPSTP-STCELSTA 568
Query: 203 PGS*PGIQPRSSCHRGSASRMSPLPSRCPRSKRCECT*S*P 81
G P S + + S PS P S T S P
Sbjct: 569 TGKIPSTTCTSPLST-ATGKTSSTPSTSPLSTSTSKTSSTP 608
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 235 EEAVRRNEIQSKIDLSKPGVIVNVVNAGFDLRTLGILPEIGFQMRDEVSDNRFPRFTLDL 414
EEA+RRN++++ + K GV + G D+ T G + R++ + ++D+
Sbjct: 42 EEALRRNDVKAIVVTGKGGVF----SGGLDINTFGAI------QRNKAEQLKVDYVSIDV 91
Query: 415 HVNTKEK--KYHLNAYNTPEFG 474
NT E K + A N P G
Sbjct: 92 MTNTLEAAGKPSVAAINGPALG 113
>02_05_1018 -
33530834-33530926,33531036-33531098,33531193-33531236,
33531973-33532118,33532262-33532281,33532365-33532500,
33532585-33532804,33532905-33533085,33533495-33533518,
33534127-33534341,33534425-33534705,33535987-33536210
Length = 548
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 568 IYGESLLVGYVTVVSRAITLTEDRKRLPKHSFRTQV 461
IYG ++GY+ + TL++ LPKHSF ++V
Sbjct: 389 IYGSFAIIGYLMFGDK--TLSQITLNLPKHSFASKV 422
>08_02_1237 +
25475219-25475916,25476127-25476320,25476407-25477302,
25477416-25477490,25477582-25477689,25477780-25477897,
25478007-25478142,25478228-25478372,25478460-25479080,
25479166-25479597
Length = 1140
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 168 GATRLNPGSRTWSTRTLTFTA 230
GATRL+ RTW+T LTF +
Sbjct: 697 GATRLSKSWRTWNTPELTFVS 717
>02_05_0609 -
30335054-30335374,30335491-30335870,30336102-30336443,
30336551-30336700,30336781-30336878,30336986-30337045,
30337140-30337211,30337337-30337480,30337584-30337655,
30337767-30337899,30338076-30338181
Length = 625
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 184 IPGHEPGVQELLHLLRGEEAVRRNEIQSKIDLSK 285
+PGH P + E++ +L G+ R E + D K
Sbjct: 560 LPGHRPRMSEVVRMLEGDGLAERWEASQRADSHK 593
>03_02_0193 +
6312518-6312554,6312948-6313091,6313214-6313368,
6313596-6313871,6313957-6314081,6314234-6314351,
6314663-6314740,6318972-6319059,6319241-6319297,
6319398-6319405
Length = 361
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +2
Query: 230 EEKKQCAAMRSNPRLICRNPESSSTWLTPDSIFVRLVSYLKLASKCVTRSP 382
EE K C + S RLIC S WL D Y L K T P
Sbjct: 77 EESKVCTVLTS-ARLICSKYSSMDQWLGSDEYSPDATVYAHLLDKDETTVP 126
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 122 NEKGVETFLKLSLGDRSYAAESRVTNLEYKNSYIYCEEKKQCAAMRSNP 268
NEK + S+GDR SR NL K Y +++Q RS P
Sbjct: 19 NEKAEDEAAYESVGDRDVDLNSRQWNLNEKAEDAYHSDEEQYDGGRSGP 67
>04_04_0626 -
26686411-26686518,26686876-26686953,26687763-26687810,
26688012-26688167,26688725-26688795,26689949-26690055,
26690145-26691112
Length = 511
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -2
Query: 263 WISLRRTASSPRSKCKSSCTPGS*PGIQPRSSCHRGSASRMSPLPSRCPRSKRCECT 93
W + + AS+ +KC S TPG+ G S S R+ S K+ C+
Sbjct: 312 WFAGLKFASTSSTKCYSDATPGTVWGCSQVPSSSTSSVDRIDEQLSDFETKKQISCS 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,753,315
Number of Sequences: 37544
Number of extensions: 414281
Number of successful extensions: 1117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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