Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0782
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.080
SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)         33   0.18 
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  

>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1185

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
 Frame = -2

Query: 494 TTPEA*FPN-SGVL*ALRWYFFSLVLT*RSKVNLGKRLSETSSRI----WKPISGKIPSV 330
           + P+  FP+ S  +    W   S   T   K   GK +S +SS I     KP++ + P+V
Sbjct: 620 SAPDNFFPSRSSTITGSSWSSSSTTTTKHVKTVNGKVVSSSSSTISTSSGKPMTSEGPTV 679

Query: 329 RRSNPALTTLTMTPGFDKSILDWISLRRTASSPRSKCKSSCTPGS*PGIQPR 174
             SNP +T+ +M     ++    + +R    +P  + K++ TP   P ++PR
Sbjct: 680 TSSNPTVTSSSMMASSVEANPP-LPVRSPRPTPLPR-KTTSTPEKRPDVKPR 729


>SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)
          Length = 609

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +3

Query: 165 TGATRLNPGSRTWSTRTLTFTARRRSSAPQ*DPIQD 272
           T +  +N  +RTWS R+ T +  +R+SAP+  P+++
Sbjct: 546 TTSMTINMAARTWSRRSHTSSTAKRASAPEKTPVEE 581


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 528 TTVTYPTSSDSPYIFSGEACLDLDKKKQGHXTSVRYLINISNNRNQGSYCC 680
           T  +Y  + ++ Y  +GE C D+D+   G  T        +N  N GSY C
Sbjct: 741 TVGSYTCACNAGYTGNGETCADIDECSVGSHTCAPSGSTCTN--NVGSYVC 789


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,455,244
Number of Sequences: 59808
Number of extensions: 465421
Number of successful extensions: 1199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)