Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0782
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR...    31   0.61 
At3g02930.1 68416.m00288 expressed protein  ; expression support...    28   5.7  
At2g48040.1 68415.m06013 expressed protein                             28   5.7  
At1g66460.1 68414.m07550 protein kinase family protein contains ...    28   5.7  
At3g23420.1 68416.m02952 F-box family protein-related contains T...    28   7.5  
At4g17020.2 68417.m02567 transcription factor-related contains w...    27   9.9  
At4g17020.1 68417.m02568 transcription factor-related contains w...    27   9.9  
At2g43945.1 68415.m05462 expressed protein                             27   9.9  

>At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.; closest
            homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
          Length = 1404

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 531  TVTYPTSSDSPYIFSGEACLDLDKKKQGHXTSVRYL-INISNNRNQGSYCCRNRI 692
            TVT P SS S      +ACL +D   +G     RYL   ++ N  +  +CC NRI
Sbjct: 1252 TVTLPRSSLSQSFLRFKACLVVDPLSEGKG-FYRYLESEMTFNDVEFKFCCSNRI 1305


>At3g02930.1 68416.m00288 expressed protein  ; expression supported
           by MPSS
          Length = 806

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 8   ISKQEGQGTIIEGSGTVKVKEEQKSANFKYIRTVLTEG-NEKGVETFLKLSLGDRSYAAE 184
           + K+    +I+  +  ++VK++      K +  +L E   +K +E   +LS  ++ Y   
Sbjct: 616 LDKETEFQSIVHENDELRVKQDDSLKKIKELSELLEEALAKKHIEENGELSESEKDYDLL 675

Query: 185 SRVTNLEYKNSYIYCEEK 238
            +V     +N Y   EEK
Sbjct: 676 PKVVEFSEENGYRSAEEK 693


>At2g48040.1 68415.m06013 expressed protein 
          Length = 294

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 257 RSNPRLICRNPESSSTWLTPDSIFVRLVSYL 349
           +++ +LIC   ++S  WL PD++  R +  L
Sbjct: 63  KNDIQLICCQADASVLWLVPDTVVTRFIQSL 93


>At1g66460.1 68414.m07550 protein kinase family protein contains
           Pfam profile: PF00069: Eukaryotic protein kinase domain
          Length = 467

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 199 PGVQELLHLLRGEEAVRRNEIQSKIDLSKPGVI 297
           PG++E+L +L+G E +    + S+   + PG++
Sbjct: 402 PGMKEILSILKGGEGIELRTLSSRKKSNLPGIM 434


>At3g23420.1 68416.m02952 F-box family protein-related contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 285

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 206 YKNSYIYCEEKKQCAAMRSNPRLICRNPESSST-WLTPDSIFVRLVSY-LKLASKCVTRS 379
           Y     +C+    C  M+ NPRL+  NP S  T W+   +   RL +Y   L     T+S
Sbjct: 92  YVRHVFHCDGLLLCI-MKDNPRLVVCNPYSGQTRWIETTNNPQRLDAYSYALGYNSSTKS 150

Query: 380 PTIAS 394
             I S
Sbjct: 151 HKILS 155


>At4g17020.2 68417.m02567 transcription factor-related contains weak
           similarity to Swiss-Prot:Q92759 TFIIH basal
           transcription factor complex p52 subunit (Basic
           transcription factor 52 kDa subunit, BTF2-p52, General
           transcription factor IIH polypeptide 4) [Homo sapiens]
          Length = 462

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +2

Query: 140 TFLKLSLGDRSYAAESRVTNLEYKNSYIYCEEKKQCAAMRSNPRLICRNPESSSTWLTPD 319
           T L +SL D S   E  V        Y Y   K QC  +R   R+  + P   +  +T +
Sbjct: 282 TNLSVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKE 341

Query: 320 SIF 328
           S++
Sbjct: 342 SLY 344


>At4g17020.1 68417.m02568 transcription factor-related contains weak
           similarity to Swiss-Prot:Q92759 TFIIH basal
           transcription factor complex p52 subunit (Basic
           transcription factor 52 kDa subunit, BTF2-p52, General
           transcription factor IIH polypeptide 4) [Homo sapiens]
          Length = 452

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +2

Query: 140 TFLKLSLGDRSYAAESRVTNLEYKNSYIYCEEKKQCAAMRSNPRLICRNPESSSTWLTPD 319
           T L +SL D S   E  V        Y Y   K QC  +R   R+  + P   +  +T +
Sbjct: 282 TNLSVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKE 341

Query: 320 SIF 328
           S++
Sbjct: 342 SLY 344


>At2g43945.1 68415.m05462 expressed protein
          Length = 289

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 35  IIEGSGTVKVKEEQKSANFKYIRTVL 112
           I+EGSG+V V E + +A+  YI+ +L
Sbjct: 114 IVEGSGSVAVSELKPAADVDYIQELL 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,839,603
Number of Sequences: 28952
Number of extensions: 334319
Number of successful extensions: 1035
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)