Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0781
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.0  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   2.7  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   4.7  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   4.7  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   6.1  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   8.1  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.1  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 243 IPLKTSANS-QNLKLQLNYPRTLNSHCFYLNIKK 341
           IP+ T A+S +NL + +N  R L   C Y NI+K
Sbjct: 623 IPVITRASSSRNLLITMNCLRVLEKVCKYSNIRK 656


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +2

Query: 245 TPQDLSKLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDL 400
           T  D+  L E+++   LP+D   SL++   Q+   +  G+L  V   +++++
Sbjct: 155 TVADVDSL-EYELECTLPRDVRESLYIHDGQDRGGQPTGILFGVTLLDIEEI 205


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +2

Query: 257 LSKLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDLLSTCAFARVNLN 436
           L +LP+ +   QL    E  L     + ++  LL      PEN L+  + T  F R++L+
Sbjct: 412 LLRLPDSQTFVQLYSSTESDLL---KEGLSRILLYFFTYFPENILKLKIDTSIFLRLDLS 468

Query: 437 PQLFNYCYS 463
           P + +  +S
Sbjct: 469 PGMLDRPFS 477


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 123  ITPKGENNSVFQLTEQFLTEDYANNGIE 206
            +TP     +++ L+E FLT++   NG+E
Sbjct: 949  MTPSNGLRNIYPLSETFLTKEAIANGLE 976


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 195 NGIELNNRFGDDASEKIPLKTSANSQNLKLQLNYPRTLN 311
           NG E+  +   +   +IP  TSAN++N ++ L + +  N
Sbjct: 20  NGAEMMGQSELNTQNRIPYNTSANNRNWQIPLYWQQRGN 58


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 272 EFKIATQLPKDAEFSLFLPKHQE 340
           E   A+    D EFSLF+P+H++
Sbjct: 296 ELSDASSSDLDEEFSLFIPRHKK 318


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 306 LNSHCFYLNIKKWQMNFLAFSWMYQRTNYKICYRHA 413
           L   C   N +K +M FLAF   +   NYK    HA
Sbjct: 146 LGKMCLLFNDEKTRM-FLAFECKFSDENYKDLISHA 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,993
Number of Sequences: 5004
Number of extensions: 60768
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)