Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0781
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    30   2.1  
SB_36266| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)                   29   4.9  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   29   4.9  
SB_27388| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  28   6.5  
SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_22237| Best HMM Match : Tir_receptor_C (HMM E-Value=3.8)            28   8.6  

>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 102  DRPNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKTSANSQ 272
            D P   L++P    N+ +        + Y NN  +      D+AS KIP KT AN Q
Sbjct: 1244 DHPTR-LLSPNAHGNTGYDQGSSITNKSYQNNP-KRTQEVHDEASIKIPTKTFANGQ 1298


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +3

Query: 102 DRPNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKTSANSQNLK 281
           D+P+  +  P+G    +     QF T DY    +  + +  D ++  IPL TS      K
Sbjct: 298 DKPSTVVPLPQGAEVKLQDKRRQFETLDYKAQRLHSSGKSFDSSANSIPLSTSTRRAESK 357


>SB_36266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 567 VKLQPLFHQMFHAYLLSFHETTLRRT*KKNTACVLARRYXASTCII 704
           VKL+  FH M+    LS  ET + R   +   C++  +    TCII
Sbjct: 3   VKLRSTFHNMYMMGPLSSLETCITRYQIRLETCIIRYQIRLETCII 48


>SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)
          Length = 440

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 353 LLGVLMDVPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRKV 499
           LL +L  +PEN+          + V  NP+L  Y  +V L  ++  RK+
Sbjct: 384 LLAMLRTLPENQKSKCADMGRSSEVESNPKLPKYKATVRLQEQQSRRKI 432


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 147 SVFQLTEQFLTEDYANNGIELNNRFG-DDASEKIPLKTSANSQNLKLQLNYPRTLNSHCF 323
           S +Q+T QF++ +Y N    L   FG DD   KI     A+     L  N   T+    F
Sbjct: 126 SAYQITVQFISSNYGNFNQRLVFDFGDDDGKAKIVRHLGASRAEHPLPPNMKSTIEYGAF 185


>SB_27388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 171 FLTEDYANNG-IELNNRFGDDASEKIPLKTSANSQNLKLQLNYPRTLNS 314
           + T D A+ G +E       DASEK+  KTS  S +    + Y RT+ +
Sbjct: 72  YCTPDLASEGYVEPEETEAKDASEKMLAKTSKTSSSDSTIIAYKRTIGT 120


>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 589 WNNGCS-FTSLSEYLGIPRI*REILLQNLNSDFSGITSVHQCH 464
           +N  CS   S   Y   P+I REI +++L+S +S  T+   CH
Sbjct: 74  YNPLCSTIASTCRYSWRPKISREIPIRHLSSYYSSQTTTAACH 116


>SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 314 SLFLPKHQEMANELLGVLMDVPENELQDLLS 406
           ++F    QE  NEL   L D+P   L DLL+
Sbjct: 164 TIFKSSKQEQVNELSEALSDIPSEVLFDLLN 194


>SB_22237| Best HMM Match : Tir_receptor_C (HMM E-Value=3.8)
          Length = 427

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 165 EQFLTEDYANNGIELNNRFGDDASEKIPLKTSANSQNLK 281
           E+F TED    G +L N+ G     K  L TS NS ++K
Sbjct: 130 EEFETEDAGRTGQKLYNKNGSTVESKKTL-TSMNSSHVK 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,809,252
Number of Sequences: 59808
Number of extensions: 434389
Number of successful extensions: 1079
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)