Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0781
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23920.1 68416.m03005 beta-amylase, putative / 1,4-alpha-D-gl...    29   4.0  
At4g17120.1 68417.m02578 expressed protein                             28   5.3  
At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putativ...    27   9.3  

>At3g23920.1 68416.m03005 beta-amylase, putative /
           1,4-alpha-D-glucan maltohydrolase, putative similar to
           beta-amylase enzyme [Arabidopsis thaliana] GI:6065749,
           beta-amylase PCT-BMYI from [Solanum tuberosum]; contains
           Pfam profile PF01373: Glycosyl hydrolase family 14
          Length = 575

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +2

Query: 281 IATQLPKDAEFSLFLPKHQEMANE--LLGVLMDVPENELQDLLSTCAFARVNLNPQLF 448
           +A ++P   E +L  P++ + A+E  L    +++ +N   +    CAF  + +NP+LF
Sbjct: 468 LAAEVPLAGENAL--PRYDDYAHEQILKASALNLDQNNEGEPREMCAFTYLRMNPELF 523


>At4g17120.1 68417.m02578 expressed protein
          Length = 1661

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -3

Query: 689 CXISSRQYASGVLLLSPSQCSLVE 618
           C +SS QY +GV+ LSP+Q S VE
Sbjct: 563 CGLSSHQY-TGVIRLSPNQTSPVE 585


>At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putative /
           O-acetylserine (thiol)-lyase, putative / O-acetylserine
           sulfhydrylase, putative identical to SP|O22682 Probable
           cysteine synthase, chloroplast precursor {Arabidopsis
           thaliana}, similar to SP|P31300 Cysteine synthase,
           chloroplast precursor {Capsicum annuum}
          Length = 404

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 432 RFTRAKAHVDSKSCNSFSGTSMRTPRSSFAIS*CLGRNNENSAS 301
           RF+ AK  + S   +S S  ++RTP SSF +    G+++  + S
Sbjct: 25  RFSTAKLSLFSFHHDSSSSLAVRTPVSSFVVGAISGKSSTGTKS 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,090,752
Number of Sequences: 28952
Number of extensions: 306552
Number of successful extensions: 758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)