Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0778
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   104   1e-23
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    28   1.1  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   1.9  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   7.8  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  104 bits (249), Expect = 1e-23
 Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
 Frame = +1

Query: 40  ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVK 219
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA  +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 220 TLHPAVHAGILA-DYPT 267
           TLHPAVH GILA D P+
Sbjct: 63  TLHPAVHGGILARDIPS 79



 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 35/58 (60%), Positives = 46/58 (79%)
 Frame = +3

Query: 249 LSRLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 422
           L+R   SD++D+  Q  E I +VVCNLYPF +T++KP+VT+ +AVE IDIGGVTLLRA
Sbjct: 73  LARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDIGGVTLLRA 130



 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 36/78 (46%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
 Frame = +2

Query: 428 KNHDRVTVVCDPADYDAVVKXIKENKHIRRLWAQGRD*-P*RAFTHTSXYXLAISDYFRK 604
           KNH RVT++ DPADY         +K    L    R+    +AF  T+ Y  AI+DYFRK
Sbjct: 133 KNHARVTILSDPADYATFTDKFLSDK----LTQDDRNTYALKAFASTASYDAAITDYFRK 188

Query: 605 QYSPGXAQLXLRYGMDPH 658
           QY+ G  QL LRYG +PH
Sbjct: 189 QYAAGVDQLTLRYGANPH 206


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 156 PHSSRCVGHHESTGDARRSGENFTSSGTCWD 248
           PHS    GH +ST  +  S  N  S GT +D
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD 277


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 409 VTPPMSMFSTASATVTS-GLDTVWTNGYRLQTT 314
           V PP+S F +AS  V   G   +W NGYR   T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 466 GRVTDDGDPVVVLGXARRRVTPPMSMFSTASATVTSGLDTVWTNGYRL 323
           G+ T  G   V +    RRV P +S+  ++  TV   +DT ++   +L
Sbjct: 461 GQSTKPGADPVSVEEELRRVIPMISLLRSSGITVPISIDTYYSKVAKL 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,883
Number of Sequences: 5004
Number of extensions: 47650
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)