Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0778
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    85   4e-17
09_04_0652 - 19227686-19227926,19229368-19232294                       31   0.86 
07_03_0734 + 21067747-21068569,21069678-21069812,21069967-210701...    31   1.1  
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111...    29   2.6  
11_02_0149 - 8801675-8804332                                           29   3.5  
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    28   6.1  
08_01_0621 - 5426210-5427787                                           28   8.0  
05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004     28   8.0  
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241     28   8.0  
03_01_0112 + 902459-902770,903275-903280                               28   8.0  
02_01_0009 + 58815-58884,59086-59156,59632-59725,59797-59864,601...    28   8.0  

>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 42/74 (56%), Positives = 51/74 (68%)
 Frame = +1

Query: 34  KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGR 213
           K AL+S+SDKT L  L   L   G  +I++GGTA++L  AG+ V  V  IT  PEML GR
Sbjct: 46  KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105

Query: 214 VKTLHPAVHAGILA 255
           VKTLHP+VH GILA
Sbjct: 106 VKTLHPSVHGGILA 119



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +3

Query: 312 VVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 422
           VVV NLYPF   V+   ++  D +ENIDIGG T++RA
Sbjct: 140 VVVVNLYPFYNKVTSGVISFEDGIENIDIGGPTMIRA 176



 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = +2

Query: 428 KNHDRVTVVCDPADYDAVVKXI---KENKHIRRLWAQGRD*P*RAFTHTSXYXLAISDYF 598
           KNH  V V+ D  DY A+++ +   ++++  R++ A       +AF H + Y  A+S++ 
Sbjct: 179 KNHKDVLVMVDHEDYPALLEYLQGKQDDQQFRKMLAW------KAFQHVASYDSAVSEWL 232

Query: 599 RKQ 607
            KQ
Sbjct: 233 WKQ 235


>09_04_0652 - 19227686-19227926,19229368-19232294
          Length = 1055

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 144 SERRPHSSRCVGHHESTGDARRSGENFTSSGTCWDLSRLSDSDQ 275
           SE+ P  S C     S  +  ++G +    GTCW L  + D+D+
Sbjct: 447 SEKEPEPSECSESCASVPNLEQTGTSNVEDGTCW-LDYIDDADE 489


>07_03_0734 +
           21067747-21068569,21069678-21069812,21069967-21070100,
           21070182-21070449,21070472-21070709,21070787-21070937,
           21071040-21071387
          Length = 698

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -1

Query: 529 LCPKSSDMFVLFD----XFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASATV 365
           LCP + D+F+++D     F    ++   TD+G P++++       T    +F  A+AT+
Sbjct: 102 LCPYNKDVFIVYDLCYLRFTNRNLLASATDNGSPMMLMNAQNASAT--AEVFDAAAATL 158


>05_05_0075 +
           22209322-22210041,22210323-22210391,22210775-22211145,
           22212291-22212351,22212496-22213086
          Length = 603

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
 Frame = +3

Query: 90  PVGMWPAVDCQWRYRHGASERRPHS-----SRCVGHHESTGDARRSGENFTSSGTCWDLS 254
           P G WP     + Y   +S   PHS     ++ V H    G A   G    S      LS
Sbjct: 63  PPGSWPLPPAFYSYASSSSSYSPHSPTLAHAQLVAHGMPPGAATSGGAQIPSQNFALSLS 122

Query: 255 RLSDSDQEDMKRQ 293
             S +     +RQ
Sbjct: 123 SASSNPPPTPRRQ 135


>11_02_0149 - 8801675-8804332
          Length = 885

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 7   SKQNMASNGKLALLSVSDKTGLLSLAKSLSECGLQL 114
           S QN+ S G +ALL+ ++ T + S + S +E G QL
Sbjct: 553 SCQNVTSMGVMALLATAEPTSMPSSSTSSNETGSQL 588


>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 392 DVLDRVRHGHVRLRYRLDE-RVQVTDHH 312
           DVL  +R GHV L Y L E      DHH
Sbjct: 687 DVLKLIRDGHVELHYTLKEFSTPHADHH 714


>08_01_0621 - 5426210-5427787
          Length = 525

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 481 YSIVVGRVTDDGDPVVVLGXARRRVTPP 398
           YS+  GR+ DDGD  + +   RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167


>05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004
          Length = 591

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 140 AVAVPPLAINCRPHSDRLFANESRPVLSETLRRASF 33
           AV  PP+A  CRPH  RL    +  V  + L R+ +
Sbjct: 20  AVLHPPVASACRPHPPRLIRCGAAAVPDDELLRSLY 55


>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
          Length = 1445

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 171 CVGHHESTGDARRSGENFTSSGTCWDLSRLSDSDQEDMKRQKYEMI 308
           C   +E TG      ++F  +GT WDL     +D    +R+ +E +
Sbjct: 822 CPDLYEQTGTGDGQSQDFHINGTVWDLIPGVITDMYQHQREAFEFM 867


>03_01_0112 + 902459-902770,903275-903280
          Length = 105

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 210 TSEHLRCSRDVRHILNCEAGVPK 142
           T+  LR  RD RH+  CE+GVPK
Sbjct: 58  TATRLRL-RDGRHLAYCESGVPK 79


>02_01_0009 +
           58815-58884,59086-59156,59632-59725,59797-59864,
           60145-60243,60538-60594,60943-61011,63111-63179,
           63372-64322
          Length = 515

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +1

Query: 226 HPAVHAGILADYPTLTRKT*NVRSTR 303
           HPA  AG  A YPT T K+  V STR
Sbjct: 450 HPAESAGNGAGYPTPTAKSFGVFSTR 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,526,857
Number of Sequences: 37544
Number of extensions: 362783
Number of successful extensions: 1176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)