BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0778 (691 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 85 4e-17 09_04_0652 - 19227686-19227926,19229368-19232294 31 0.86 07_03_0734 + 21067747-21068569,21069678-21069812,21069967-210701... 31 1.1 05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111... 29 2.6 11_02_0149 - 8801675-8804332 29 3.5 02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 28 6.1 08_01_0621 - 5426210-5427787 28 8.0 05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004 28 8.0 05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 28 8.0 03_01_0112 + 902459-902770,903275-903280 28 8.0 02_01_0009 + 58815-58884,59086-59156,59632-59725,59797-59864,601... 28 8.0 >08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106, 6214498-6214594,6214760-6214862,6214973-6215103, 6215285-6215462,6215528-6215715,6215945-6216154, 6216231-6216578,6216660-6216786,6217304-6217455 Length = 579 Score = 85.4 bits (202), Expect = 4e-17 Identities = 42/74 (56%), Positives = 51/74 (68%) Frame = +1 Query: 34 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGR 213 K AL+S+SDKT L L L G +I++GGTA++L AG+ V V IT PEML GR Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105 Query: 214 VKTLHPAVHAGILA 255 VKTLHP+VH GILA Sbjct: 106 VKTLHPSVHGGILA 119 Score = 45.6 bits (103), Expect = 4e-05 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +3 Query: 312 VVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 422 VVV NLYPF V+ ++ D +ENIDIGG T++RA Sbjct: 140 VVVVNLYPFYNKVTSGVISFEDGIENIDIGGPTMIRA 176 Score = 31.9 bits (69), Expect = 0.49 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Frame = +2 Query: 428 KNHDRVTVVCDPADYDAVVKXI---KENKHIRRLWAQGRD*P*RAFTHTSXYXLAISDYF 598 KNH V V+ D DY A+++ + ++++ R++ A +AF H + Y A+S++ Sbjct: 179 KNHKDVLVMVDHEDYPALLEYLQGKQDDQQFRKMLAW------KAFQHVASYDSAVSEWL 232 Query: 599 RKQ 607 KQ Sbjct: 233 WKQ 235 >09_04_0652 - 19227686-19227926,19229368-19232294 Length = 1055 Score = 31.1 bits (67), Expect = 0.86 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 144 SERRPHSSRCVGHHESTGDARRSGENFTSSGTCWDLSRLSDSDQ 275 SE+ P S C S + ++G + GTCW L + D+D+ Sbjct: 447 SEKEPEPSECSESCASVPNLEQTGTSNVEDGTCW-LDYIDDADE 489 >07_03_0734 + 21067747-21068569,21069678-21069812,21069967-21070100, 21070182-21070449,21070472-21070709,21070787-21070937, 21071040-21071387 Length = 698 Score = 30.7 bits (66), Expect = 1.1 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 4/59 (6%) Frame = -1 Query: 529 LCPKSSDMFVLFD----XFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASATV 365 LCP + D+F+++D F ++ TD+G P++++ T +F A+AT+ Sbjct: 102 LCPYNKDVFIVYDLCYLRFTNRNLLASATDNGSPMMLMNAQNASAT--AEVFDAAAATL 158 >05_05_0075 + 22209322-22210041,22210323-22210391,22210775-22211145, 22212291-22212351,22212496-22213086 Length = 603 Score = 29.5 bits (63), Expect = 2.6 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 5/73 (6%) Frame = +3 Query: 90 PVGMWPAVDCQWRYRHGASERRPHS-----SRCVGHHESTGDARRSGENFTSSGTCWDLS 254 P G WP + Y +S PHS ++ V H G A G S LS Sbjct: 63 PPGSWPLPPAFYSYASSSSSYSPHSPTLAHAQLVAHGMPPGAATSGGAQIPSQNFALSLS 122 Query: 255 RLSDSDQEDMKRQ 293 S + +RQ Sbjct: 123 SASSNPPPTPRRQ 135 >11_02_0149 - 8801675-8804332 Length = 885 Score = 29.1 bits (62), Expect = 3.5 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = +1 Query: 7 SKQNMASNGKLALLSVSDKTGLLSLAKSLSECGLQL 114 S QN+ S G +ALL+ ++ T + S + S +E G QL Sbjct: 553 SCQNVTSMGVMALLATAEPTSMPSSSTSSNETGSQL 588 >02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659, 3769736-3769990,3770763-3770934,3772260-3772910, 3773659-3774045,3774123-3774155,3774239-3774307, 3774388-3774463,3775135-3775223,3775442-3775615, 3775693-3775821 Length = 907 Score = 28.3 bits (60), Expect = 6.1 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Frame = -3 Query: 392 DVLDRVRHGHVRLRYRLDE-RVQVTDHH 312 DVL +R GHV L Y L E DHH Sbjct: 687 DVLKLIRDGHVELHYTLKEFSTPHADHH 714 >08_01_0621 - 5426210-5427787 Length = 525 Score = 27.9 bits (59), Expect = 8.0 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -1 Query: 481 YSIVVGRVTDDGDPVVVLGXARRRVTPP 398 YS+ GR+ DDGD + + RR V+ P Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167 >05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004 Length = 591 Score = 27.9 bits (59), Expect = 8.0 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -3 Query: 140 AVAVPPLAINCRPHSDRLFANESRPVLSETLRRASF 33 AV PP+A CRPH RL + V + L R+ + Sbjct: 20 AVLHPPVASACRPHPPRLIRCGAAAVPDDELLRSLY 55 >05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 Length = 1445 Score = 27.9 bits (59), Expect = 8.0 Identities = 13/46 (28%), Positives = 22/46 (47%) Frame = +3 Query: 171 CVGHHESTGDARRSGENFTSSGTCWDLSRLSDSDQEDMKRQKYEMI 308 C +E TG ++F +GT WDL +D +R+ +E + Sbjct: 822 CPDLYEQTGTGDGQSQDFHINGTVWDLIPGVITDMYQHQREAFEFM 867 >03_01_0112 + 902459-902770,903275-903280 Length = 105 Score = 27.9 bits (59), Expect = 8.0 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = -2 Query: 210 TSEHLRCSRDVRHILNCEAGVPK 142 T+ LR RD RH+ CE+GVPK Sbjct: 58 TATRLRL-RDGRHLAYCESGVPK 79 >02_01_0009 + 58815-58884,59086-59156,59632-59725,59797-59864, 60145-60243,60538-60594,60943-61011,63111-63179, 63372-64322 Length = 515 Score = 27.9 bits (59), Expect = 8.0 Identities = 15/26 (57%), Positives = 16/26 (61%) Frame = +1 Query: 226 HPAVHAGILADYPTLTRKT*NVRSTR 303 HPA AG A YPT T K+ V STR Sbjct: 450 HPAESAGNGAGYPTPTAKSFGVFSTR 475 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,526,857 Number of Sequences: 37544 Number of extensions: 362783 Number of successful extensions: 1176 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1176 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1756684372 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -