Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0778
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   1e-25
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      81   8e-16
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)                 31   0.88 
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_26612| Best HMM Match : NC (HMM E-Value=6.7)                        29   4.7  
SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   8.2  
SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  113 bits (272), Expect = 1e-25
 Identities = 57/84 (67%), Positives = 68/84 (80%), Gaps = 2/84 (2%)
 Frame = +1

Query: 10  KQNMAS--NGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDI 183
           K+ MA+   G LALLSVS+K GL+  AK L + G +L+ASGGTA A+RNAG+ V+DVS+I
Sbjct: 24  KKKMAAVGAGSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEI 83

Query: 184 TRAPEMLGGRVKTLHPAVHAGILA 255
           T APEMLGGRVKTLHPAVH GILA
Sbjct: 84  TGAPEMLGGRVKTLHPAVHGGILA 107



 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 39/79 (49%), Positives = 54/79 (68%)
 Frame = +2

Query: 428 KNHDRVTVVCDPADYDAVVKXIKENKHIRRLWAQGRD*P*RAFTHTSXYXLAISDYFRKQ 607
           KNH+RVTVVCDP DY+ V+  + EN+    L    +    +AF+HT+ Y +AISDYFRK+
Sbjct: 166 KNHERVTVVCDPEDYNKVLSEMTENETCDTLPDTRKTLALKAFSHTASYDMAISDYFRKE 225

Query: 608 YSPGXAQLXLRYGMDPHSE 664
           YS   + + LRYGM+PH +
Sbjct: 226 YSENVSHIPLRYGMNPHQK 244



 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 38/58 (65%), Positives = 47/58 (81%)
 Frame = +3

Query: 249 LSRLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 422
           L+R+S+ D+ DM +Q +E I VVVCNLYPFV TV+K  V V++AVE IDIGGVTLLRA
Sbjct: 106 LARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 163


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 38/58 (65%), Positives = 47/58 (81%)
 Frame = +3

Query: 249 LSRLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 422
           L+R+S+ D+ DM +Q +E I VVVCNLYPFV TV+K  V V++AVE IDIGGVTLLRA
Sbjct: 3   LARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60



 Score = 35.5 bits (78), Expect = 0.041
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +2

Query: 428 KNHDRVTVVCDPADYD 475
           KNH+RVTVVCDP DY+
Sbjct: 63  KNHERVTVVCDPEDYN 78


>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
          Length = 714

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 369 VADAVENIDIGGVTLLRAXPRT--TTGSPSSVTRPTTML*SKXSKRTNISDDFGHKAEIS 542
           +A AV N+ +   T LR  P T  TTGSPS VTR    +    S  + ++   G    ++
Sbjct: 246 IAPAVTNL-VTLSTALRVLPSTSATTGSPSFVTRQGVPVRIVTSSGSQVATSSGVVRAVT 304

Query: 543 PEGR 554
           P G+
Sbjct: 305 PSGK 308


>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1194

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 181 CPTHLEL*GRRSEAPWRYRHWQSTAGHIPTGSLLTRVDPSCLK 53
           CP  + +   R+ +   Y  W+       TG+L+TR++PS +K
Sbjct: 447 CPNDITITTARNNSKAAYVTWKPPQAVDNTGNLVTRIEPSEIK 489


>SB_26612| Best HMM Match : NC (HMM E-Value=6.7)
          Length = 451

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -1

Query: 502 VLFDXFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVWTNG 332
           V+   +  S+   RVT   D V        R+TP M    TAS T   +T  +DTV+T  
Sbjct: 68  VMDTVYTASVTFYRVTLVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTAS 127

Query: 331 YRLQTTTLII 302
                 TL++
Sbjct: 128 VTFYRLTLVM 137



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -1

Query: 502 VLFDXFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVWTNG 332
           V+   +  S+   R+T   D V        R+TP M    TAS T   +T  +DTV+T  
Sbjct: 136 VMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTAS 195

Query: 331 YRLQTTTLII 302
                 TL++
Sbjct: 196 VTFYRLTLVM 205



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -1

Query: 502 VLFDXFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVWTNG 332
           V+   +  S+   R+T   D V        R+TP M    TAS T   VT  +DTV+T  
Sbjct: 272 VMDTVYTASVTFYRLTLVMDTVYTASVTFYRLTPVMDTVYTASVTFFRVTLVMDTVYTAS 331

Query: 331 YRLQTTTLIIS 299
                 TL+++
Sbjct: 332 VTFFRVTLVMN 342


>SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 264 DSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVT 410
           +SD+ED + + YE+I          ++ +   D+     ++ I IGG T
Sbjct: 5   ESDKEDSQEEPYEIIETPGARQQDLLRDLMSMDLGNRTTIQQIGIGGAT 53


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 342  QTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTT 473
            +T   P+ T        +I GV+   A P TT+G P + T P T
Sbjct: 2571 ETTFVPETTAVPETTGSEITGVSETTAVPETTSG-PMTTTGPET 2613


>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 645

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 27  KWKTSSSQRFRQDGSTLVSKEP 92
           +W T  ++R+R+DGS ++  EP
Sbjct: 334 QWHTVVAERYRRDGSLILDSEP 355


>SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 162 SSRCVGHHESTGDARRSGENFTSSGTCWDLSRLSDSDQED 281
           S RCV   ES G     G + + SG+C D +++ D D  D
Sbjct: 45  SIRCVHVAESRGVVLSGGYDTSISGSCDDDNKVGDDDGVD 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,928,441
Number of Sequences: 59808
Number of extensions: 410476
Number of successful extensions: 1084
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)