Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0778
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical pr... 108 3e-24
U58747-2|AAQ91905.1| 393|Caenorhabditis elegans Hypothetical pr... 37 0.016
U47144-3|AAB52619.1| 292|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 28 7.2
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 28 7.2
U70852-5|AAK29817.2| 322|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical p... 27 9.6
AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical ... 27 9.6
AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear recep... 27 9.6
AF025450-7|AAN63434.2| 170|Caenorhabditis elegans Hypothetical ... 27 9.6
>U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical
protein C55F2.1b protein.
Length = 594
Score = 108 bits (260), Expect = 3e-24
Identities = 52/79 (65%), Positives = 61/79 (77%)
Frame = +1
Query: 19 MASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPE 198
M LA++SVSDKTGL+ LA L GL LIASGGTA A+R+ G+ V DV+D+T+ PE
Sbjct: 1 MTDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPE 60
Query: 199 MLGGRVKTLHPAVHAGILA 255
MLGGRVKTLHPAVH GILA
Sbjct: 61 MLGGRVKTLHPAVHGGILA 79
Score = 75.8 bits (178), Expect = 3e-14
Identities = 34/58 (58%), Positives = 46/58 (79%)
Frame = +3
Query: 249 LSRLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 422
L+R ++SD++D+++ +SVVVCNLYPF +TV D +V +AVENIDIGGVTLLRA
Sbjct: 78 LARDTESDRKDLEKHNISFVSVVVCNLYPFKKTVQSKDCSVEEAVENIDIGGVTLLRA 135
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Frame = +2
Query: 428 KNHDRVTVVCDPADYDAVVKXIKE---NKHIRRLWAQGRD*P*RAFTHTSXYXLAISDYF 598
KNH+RV+V+CDPADYD ++ +K + R+L A +AF HT+ Y +IS +
Sbjct: 138 KNHERVSVICDPADYDHIISELKSGGTTRERRQLLAL------KAFEHTTSYDESISGFM 191
Query: 599 RKQYS-PGXAQLXLRYGMDPHSE 664
R++++ G L LRYG +PH +
Sbjct: 192 RRRFAGNGERALPLRYGTNPHQK 214
>U58747-2|AAQ91905.1| 393|Caenorhabditis elegans Hypothetical
protein C55F2.1c protein.
Length = 393
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 548 RAFTHTSXYXLAISDYFRKQYS-PGXAQLXLRYGMDPHSE 664
+AF HT+ Y +IS + R++++ G L LRYG +PH +
Sbjct: 45 KAFEHTTSYDESISGFMRRRFAGNGERALPLRYGTNPHQK 84
>U47144-3|AAB52619.1| 292|Caenorhabditis elegans Hypothetical
protein ZC53.6 protein.
Length = 292
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = -3
Query: 206 PSISGALVMSDTS*TVRPAFRSAVAVPPLAINCRPHSDRLFANESRPVLSETLRRASFPF 27
PS S A S +RP +++ A P A H+D+LF E LRR +FPF
Sbjct: 6 PSSSEAPTPSGQCSRLRPRSKNSTAPEPPAPKLTDHTDKLFI--------EQLRRTTFPF 57
Query: 26 D 24
+
Sbjct: 58 E 58
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 22 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSD 180
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 22 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSD 180
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 22 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSD 180
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 22 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSD 180
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>U70852-5|AAK29817.2| 322|Caenorhabditis elegans Hypothetical
protein F45E4.6 protein.
Length = 322
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 300 EMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTR 464
+ I + +LYPFV + T ADAV++ + + + RTTT + + T+
Sbjct: 244 DRIDFTLYDLYPFVGKLGGCIYTEADAVDDKNSIHTLFIYSTTRTTTTTAKTTTK 298
>Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 129 YRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTC 242
Y+H A H+S HH +TG R +N T + C
Sbjct: 61 YQHQALPVTMHTSTSSAHHTTTGHGRGRRKNSTINLVC 98
>AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 129 YRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTC 242
Y+H A H+S HH +TG R +N T + C
Sbjct: 61 YQHQALPVTMHTSTSSAHHTTTGHGRGRRKNSTINLVC 98
>AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear receptor
NHR-62 protein.
Length = 489
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 129 YRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTC 242
Y+H A H+S HH +TG R +N T + C
Sbjct: 35 YQHQALPVTMHTSTSSAHHTTTGHGRGRRKNSTINLVC 72
>AF025450-7|AAN63434.2| 170|Caenorhabditis elegans Hypothetical
protein C41H7.2 protein.
Length = 170
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 223 KFSPDLRASPVLS*CPTHLEL*GRRSEAPWRYRHWQSTAGH 101
KF R P S C T + G +EAP +R Q+TA +
Sbjct: 128 KFPATPRILPTRSSCSTACQSSGEENEAPKNHRKAQTTAAY 168
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,910,085
Number of Sequences: 27780
Number of extensions: 285117
Number of successful extensions: 834
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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