Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0778
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    89   3e-18
At1g64410.1 68414.m07301 hypothetical protein                          28   6.7  
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    28   6.7  
At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) iden...    27   8.9  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 44/82 (53%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
 Frame = +1

Query: 13  QNMASNG-KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITR 189
           Q+  S+G K AL+S+SDK  L SL   L E G  ++++GGTA+ L NAG++V  V  +T 
Sbjct: 64  QSSGSSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTH 123

Query: 190 APEMLGGRVKTLHPAVHAGILA 255
            PEML GRVKTLHP +H GILA
Sbjct: 124 FPEMLDGRVKTLHPNIHGGILA 145



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +3

Query: 312 VVVCNLYPFVQTVSKPD-VTVADAVENIDIGGVTLLRA 422
           VVV NLYPF + V+ P  ++  D +ENIDIGG  ++RA
Sbjct: 166 VVVVNLYPFYEKVTAPGGISFEDGIENIDIGGPAMIRA 203



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
 Frame = +2

Query: 428 KNHDRVTVVCDPADYDAVVKXIKENKHIRRLWAQGRD*P*RAFTHTSXYXLAISDYFRKQ 607
           KNH  V +V D  DY AV++ +K  +  ++     R    +AF H + Y  A+S++  KQ
Sbjct: 206 KNHKDVLIVVDSGDYQAVLEYLKGGQSDQQF---RRKLAWKAFQHVAAYDSAVSEWLWKQ 262

Query: 608 YS-----------PGXAQLXLRYGMDPHSEA 667
                        P   +  LRYG +PH +A
Sbjct: 263 TEGKEKFPPSFTVPLVLKSSLRYGENPHQKA 293


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 428 KNHDRVTVVCDPADYDAVVKXIKENK 505
           K HDRVTV  +P D D   K   E K
Sbjct: 582 KGHDRVTVTVEPNDQDTAKKEKDEVK 607


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 428 KNHDRVTVVCDPADYDAVVKXIKENK 505
           K HDRVTV  +P D D   K   E K
Sbjct: 208 KGHDRVTVTVEPNDQDTAKKEKDEVK 233


>At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3)
           identical to RSH3 (RelA/SpoT homolog) GI:7141308 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01966:
           HD domain, PF04607: Region found in RelA / SpoT proteins
          Length = 712

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 60  QDGSTLVSKEPVGMWP--AVDCQWRYRHGASERRP 158
           +DGS++ S EP+  +P  A DC + Y+   ++  P
Sbjct: 565 KDGSSICSSEPLCSFPSHAEDCPFSYKPSGNQEGP 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,178,035
Number of Sequences: 28952
Number of extensions: 267956
Number of successful extensions: 800
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)