Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0777
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 32 0.099
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 30 0.30
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 28 1.2
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 27 2.1
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 27 2.8
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 27 2.8
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 27 2.8
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 26 4.9
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 26 6.5
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 25 8.6
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 31.9 bits (69), Expect = 0.099
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 488 SSPSREPKKLEFTINSKNPSPDSYSSTL--IVDADGRVYKLENNVVLSKGPSSIGPQILQ 661
S+PS+ K TIN+ SP SS L + D + K NN LS P + ++ +
Sbjct: 204 SNPSKSSKNGVHTINNMQSSPSPSSSFLLPLTQIDSQNVKRSNN-YLSTSPPILEQRLKR 262
Query: 662 SKLEQTKXDFH 694
+++ + D H
Sbjct: 263 HRIDVSDEDLH 273
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 30.3 bits (65), Expect = 0.30
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +1
Query: 235 AD*C-RFIKID---VNGKKSLKDGTGTIKFLVPHVDPFIL 342
AD C F ID + G + LK+GT T+KFL + PFIL
Sbjct: 36 ADVCFAFDSIDGVLIRGGRGLKEGTKTLKFLQKNNIPFIL 75
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 312 ELDGSSSILKTFLAIHIDFDKSALICTDSTSVYSAKSLPSGWRKN 178
E+ S SI K IDFD++ IC DS + AK L + N
Sbjct: 465 EIHDSPSIRKLIDIGEIDFDQAFKICYDSNLLDEAKHLAIRFNNN 509
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 415 KAKALQYPWTLRSRHTKTISSSKGKLPKPRT*ETGVH 525
+ K + Y L +R+ K++S++KG PR + G H
Sbjct: 246 QTKTVVYEINLNTRNLKSLSTAKGACSSPRLAKDGNH 282
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 306 QVLSPSC*SIHIGV*IQEWT*RGEKEPRSRSERQYGKGKSATISLD--TAFSPHE 464
Q+LS + S + + E+T G K PR R Y K + T+ +D AFSP++
Sbjct: 249 QILSENVPSFIDSMALSEFT-LGTKSPRMGFIRSYPKTEEDTVMMDLRLAFSPND 302
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 165 HLIS*AFSNGNLTVNMKLSLNFFSPFSISLIS 70
HL+ FS N T+N SL++ PF I+ +S
Sbjct: 163 HLLWGGFSVSNPTLNRFFSLHYLMPFVIAALS 194
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -3
Query: 264 IDFDKSALICTDSTSVYSAKSLPSGW 187
+++ +S+L ++ +VYS K +PS W
Sbjct: 337 VNYSRSSLPSAENWNVYSKKDIPSRW 362
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 26.2 bits (55), Expect = 4.9
Identities = 6/29 (20%), Positives = 19/29 (65%)
Frame = +2
Query: 119 ILTVRLPFEKAHDIKWVSTIFFLQPEGKD 205
++ V +PF + D++W + + +++ + K+
Sbjct: 730 VMVVGMPFPNSQDVEWQAKVSYVEEKAKE 758
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 485 ASSPSREPKKLEFTINSKNPSP-DSYSST 568
+SS SR K+ +NS NP+P +SY+ T
Sbjct: 462 SSSASRFMSKVSSNLNSGNPTPYNSYNGT 490
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 408 IAFRFDFVALFL-PFKSILVFILQYEWINMRD*ELDGSSSILKTFLAIH 265
I +R F+ +L P L FIL Y+WI +D L + I + +H
Sbjct: 81 IGWRTVFMIEYLGPLVIHLFFILNYKWIYRKDYNLCLNQKIAFVLVMLH 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,582
Number of Sequences: 5004
Number of extensions: 67960
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -