Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0777
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25484| Best HMM Match : TENA_THI-4 (HMM E-Value=0.79)               29   3.0  
SB_53710| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_30412| Best HMM Match : E-MAP-115 (HMM E-Value=2.8)                 29   5.2  
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)         28   6.9  
SB_25086| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_3606| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  
SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_25484| Best HMM Match : TENA_THI-4 (HMM E-Value=0.79)
          Length = 380

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = -3

Query: 420 CLCHIAFRF---DFVALFLPFKSILVFILQYEWINMRD*ELDGSSSILKTFLAIHIDFDK 250
           C  HI  RF   DFV  F  F S +  IL Y W   RD   D S  +       +  F K
Sbjct: 189 CRNHILKRFKTNDFVEAFRGFISPICIILSYAWHFERD-RYDWSFKMCSNLEKYNKKFSK 247

Query: 249 SALICTDSTSVY 214
            + I  ++  V+
Sbjct: 248 DSQIPPENAKVF 259


>SB_53710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 320 LMLIHSYWSINTRMDLKGRKRATKS 394
           L+LIH  W  +T  DL   +R TKS
Sbjct: 17  LLLIHGAWGASTEDDLGSSRRVTKS 41


>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +2

Query: 344 SINTRMDLKGRKRATKSKRKAIWQRQKRYNILGHCVLATRKLSPVQRASSPSREPKKLEF 523
           ++  + ++K +KR  KS+R +  Q   R          +  +S  Q  SSPS  P    +
Sbjct: 672 AVENQNEIKKKKRRKKSRRTSNTQPSDRRATSDSAFFESGTVSREQ--SSPSLAPSDSPY 729

Query: 524 TINSKNPSPDSYSS 565
           + NS     D YSS
Sbjct: 730 SGNSSGEDWDIYSS 743


>SB_30412| Best HMM Match : E-MAP-115 (HMM E-Value=2.8)
          Length = 492

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 354 QEWT*RGEKEPRSRSERQYGKGKSATISLDTAFSPHENYLQFKG 485
           QEW  R +KE + +  R  GKG+ + +++   +   +  LQ KG
Sbjct: 406 QEWRER-QKELQGKGGRHRGKGEGSAVNVQQEWRERQKELQGKG 448


>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
          Length = 1491

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 340  LEYKYKNGLEGEKKSHEVEAKGNMAKAKALQYP-WTLRSRHTKTISSSKGKLPKPR 504
            LEY+Y+N L+ EKK +E +     A+ +AL    + L++R+ +  +  K +    R
Sbjct: 1224 LEYEYQNQLQREKKYYEDKIASLEAENEALMEDIFVLKTRYRQEKAMMKAEFETER 1279


>SB_25086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 458 TRKLSPVQRASSPSREPKKLEFTINSKNPSPDSYSST 568
           T   +P+  +S P   P+ +  T  + +PSPD  +ST
Sbjct: 125 TASTNPLASSSPPHSNPQTMPLTTAAISPSPDRSTST 161


>SB_3606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 26  GNYGDDI--SFELAGVREIKLIEKGEKKFNDNFILTVRLPFEKAHDI 160
           G+  DDI  +F L+   + K  E  + KF+DNF+    + FE+A DI
Sbjct: 35  GDKSDDILSTFNLSADDKRKY-EPVKTKFDDNFVKKRNVIFERARDI 80


>SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 625 R*YYIVLQFVDPSISIYDERATV*VRRRILGVYSELQFLRFSAWGACP 482
           R Y + L F  P  + YD   ++ + R +LG+Y   +F     +G+ P
Sbjct: 68  RDYELALSFRAPFDTYYDIYRSLSMSRLVLGIYLSERFYNSGKYGSLP 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,620,317
Number of Sequences: 59808
Number of extensions: 487976
Number of successful extensions: 1233
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)