Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0777
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.56 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.75 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.99 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 138 GNLTVNMKLSLNFFSPFSISLISRTP 61
           GNL +N K +L FF PF   ++ + P
Sbjct: 874 GNLMINNKYALKFF-PFDKHILDKLP 898


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 416 RQKRYNILGHCVLATRKLSPVQRASSPSREPKKLEFTINSKNPSPDS 556
           R++RYNI     L   KL+     +SP+  P      I +++  P++
Sbjct: 102 RRQRYNIAAANPLLAEKLAAPSSQASPTSIPYATRAEIKTESIQPET 148


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 334  FILEYKYKNGLEGEKKSHEVEAKGNMAKAKALQYPW 441
            F++E+K KN  E  + S+ V+  GN      +   W
Sbjct: 1494 FVVEHKKKNQQEWNQVSNNVKPGGNFVVLDLVPATW 1529


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 380 RATKSKRKAIWQRQKRYNILGHCVLATRKLSPVQRASSPS 499
           R + S+RK I  R +RY+      +  R+     R+ SPS
Sbjct: 8   RKSLSQRKIIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPS 47


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -3

Query: 180 NIVETHLIS*AFSNGNLTVNMKLSLNFFSPFSISL 76
           NI+  ++    F NG++  ++++SL    P ++ L
Sbjct: 132 NIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKL 166


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -3

Query: 180 NIVETHLIS*AFSNGNLTVNMKLSLNFFSPFSISL 76
           NI+  ++    F NG++  ++++SL    P ++ L
Sbjct: 132 NIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKL 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,892
Number of Sequences: 438
Number of extensions: 4478
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)