Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0777
(740 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43620.1 68418.m05332 S-locus protein-related contains some s... 32 0.46
At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family pr... 31 0.80
At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family pr... 31 0.80
At3g09670.1 68416.m01146 PWWP domain-containing protein 30 1.4
At2g45620.1 68415.m05672 nucleotidyltransferase family protein l... 30 1.4
At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase fa... 30 1.4
At1g64570.1 68414.m07319 expressed protein 30 1.9
At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containi... 29 2.4
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro... 29 3.2
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 29 4.3
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 29 4.3
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 29 4.3
At1g17980.2 68414.m02224 nucleotidyltransferase family protein c... 29 4.3
At1g17980.1 68414.m02225 nucleotidyltransferase family protein c... 29 4.3
At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein ... 28 5.7
At1g48620.1 68414.m05439 histone H1/H5 family protein weak simil... 28 5.7
At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containi... 28 7.5
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 7.5
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 27 9.9
At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containi... 27 9.9
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat... 27 9.9
>At5g43620.1 68418.m05332 S-locus protein-related contains some
similarity to S-locus protein 4 GI:6069478 from
[Brassica rapa]
Length = 410
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +1
Query: 367 EGEKKSHEVEAKGNMAKAKALQYPWTLRSRHTKTISSSKGKLPKPRT*ETGVHYKLQESV 546
E EKK+ E ++ + P +L RH I S +P+ T GV +K QE
Sbjct: 204 EKEKKTSEASNNDSLPVGLSFDNPSSLNVRHESVIKSLYSDMPRQCT-SCGVRFKCQEEH 262
Query: 547 SGLIQ*HAHR 576
S + H +
Sbjct: 263 SKHMDWHVRK 272
>At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 485
Score = 31.1 bits (67), Expect = 0.80
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 512 KLEFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVLSKGPSSIGPQILQSKLEQT 679
K EF+ +NP D+Y S D RV + ++S GP+S P + QT
Sbjct: 6 KDEFSAEKRNP--DNYDSVNNPSGDWRVDSYPSENLISAGPASCSPSQMMDSFGQT 59
>At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 486
Score = 31.1 bits (67), Expect = 0.80
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 512 KLEFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVLSKGPSSIGPQILQSKLEQT 679
K EF+ +NP D+Y S D RV + ++S GP+S P + QT
Sbjct: 6 KDEFSAEKRNP--DNYDSVNNPSGDWRVDSYPSENLISAGPASCSPSQMMDSFGQT 59
>At3g09670.1 68416.m01146 PWWP domain-containing protein
Length = 726
Score = 30.3 bits (65), Expect = 1.4
Identities = 28/85 (32%), Positives = 40/85 (47%)
Frame = -3
Query: 297 SSILKTFLAIHIDFDKSALICTDSTSVYSAKSLPSGWRKNIVETHLIS*AFSNGNLTVNM 118
+SILK +H L C+DSTS +AKS SG K++ E A S ++ +
Sbjct: 553 ASILKVANQMHCSTPTRLLPCSDSTSKKAAKSNGSG--KSLQEKPKAE-ALSAREISPST 609
Query: 117 KLSLNFFSPFSISLISRTPASSNEI 43
LS SP + S+ T SN +
Sbjct: 610 TLS----SPHAASVTKTTSGKSNSV 630
>At2g45620.1 68415.m05672 nucleotidyltransferase family protein low
similarity to SP|O13833| Caffeine-induced death protein
1 {Schizosaccharomyces pombe}; contains Pfam profiles
PF03828: PAP/25A associated domain, PF01909:
Nucleotidyltransferase domain
Length = 764
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +2
Query: 32 YGDDISFELAGVREIKLIEKGEKKF-----NDNFILTVRLPFEKAHDIKWVSTIFFLQPE 196
Y D ++ + VR ++ K EK + ND ++ + PFE +HD+ V F ++
Sbjct: 669 YAHDYAYNVVSVRTGSILGKREKDWTRRVGNDRHLICIEDPFETSHDLGRVVDKFSIRVL 728
Query: 197 GKDF 208
++F
Sbjct: 729 REEF 732
>At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|O43520], Mus musculus [SP|P70704]; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1240
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +2
Query: 431 NILGHCVLATRKLSPVQRASSPSREPKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLEN 610
N+ G L ++ A + TI ++P+P+ Y+ ++ DG+VY L+
Sbjct: 197 NLDGETNLKVKRCLDATLALEKDESFQNFSGTIKCEDPNPNLYTFVGNLECDGQVYPLDP 256
Query: 611 NVVL 622
N +L
Sbjct: 257 NQIL 260
>At1g64570.1 68414.m07319 expressed protein
Length = 1239
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 271 GKKSLK-DGTGTIKFLVPHVDPFILEYKYKNGLEGEKKSHEVEA 399
G K K D T KF+VP+ DP +L +++ L G +KS++++A
Sbjct: 578 GLKYFKYDWTSVWKFVVPYRDPSLLPRQWRTAL-GIQKSYKLDA 620
>At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 492
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 506 PKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLE 607
PK LE + +N +PD+YS + ++A G +Y LE
Sbjct: 181 PKVLE-EMKEENVAPDNYSYRICINAFGAMYDLE 213
>At3g25500.1 68416.m03171 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 1051
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +2
Query: 455 ATRKLSPVQRASSPSREPKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVLSKGP 634
A R SP +SS P+K +P S +S + + R + +++ +S
Sbjct: 456 ALRSRSPSSSSSSVCSSPEKASHKSPVTSPKLSSRNSQSLSSSPDRDFS--HSLDVSPRI 513
Query: 635 SSIGPQILQSKL 670
S+I PQILQS++
Sbjct: 514 SNISPQILQSRV 525
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 341 WSINTRMDLKGRKRATKSKRKAIWQRQKRYN 433
W++ + +L+ K+ KRK I+ R K+Y+
Sbjct: 24 WALAKKQELEAAKKQNAEKRKLIFNRAKQYS 54
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 341 WSINTRMDLKGRKRATKSKRKAIWQRQKRYN 433
W++ + +L+ K+ KRK I+ R K+Y+
Sbjct: 24 WALAKKQELEAAKKQNAEKRKLIFNRAKQYS 54
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 341 WSINTRMDLKGRKRATKSKRKAIWQRQKRYN 433
W++ + +L+ K+ KRK I+ R K+Y+
Sbjct: 24 WALAKKQELEAAKKQNAEKRKLIFNRAKQYS 54
>At1g17980.2 68414.m02224 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 586
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 450 FSPHENYLQFKGQAPQAENLRNWSSL*TPRIRLRTHTVARSS*ML 584
F ++NYLQ A ++LR W R+R T + R ML
Sbjct: 233 FEAYKNYLQIDISAANVDDLRKWKGWVESRLRQLTLKIERHFKML 277
>At1g17980.1 68414.m02225 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 713
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 450 FSPHENYLQFKGQAPQAENLRNWSSL*TPRIRLRTHTVARSS*ML 584
F ++NYLQ A ++LR W R+R T + R ML
Sbjct: 360 FEAYKNYLQIDISAANVDDLRKWKGWVESRLRQLTLKIERHFKML 404
>At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type,
domain; similar to S-locus protein 4 (GI:6069478)
[Brassica rapa]; similar to Pre-mRNA cleavage complex II
protein Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo
sapiens]
Length = 416
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +1
Query: 367 EGEKKSHEVEAKGNMAKAKALQYPWTLRSRHTKTISSSKGKLPKPRT*ETGVHYKLQESV 546
E EKK+ E ++ + P +L RH I S +P+ + G+ +K QE
Sbjct: 211 EKEKKTLEASNSDSLPVGLSFDNPSSLNVRHESVIKSLYSDMPRQCS-SCGLRFKCQEEH 269
Query: 547 SGLIQ*HAHR 576
S + H +
Sbjct: 270 SKHMDWHVRK 279
>At1g48620.1 68414.m05439 histone H1/H5 family protein weak
similarity to HMG I/Y like protein [Glycine max]
GI:15706274, HMG-I/Y protein HMGa [Triticum aestivum]
GI:20502966; contains Pfam profiles PF00538: linker
histone H1 and H5 family, PF02178: AT hook motif
Length = 479
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 452 LATRKLSPVQRASSPSREPKKLEFTINSKNPSPD 553
LA+ P + +PS EP + +F +N P PD
Sbjct: 141 LASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPD 174
>At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containing
protein vacontains Pfam profile PF01535: PPR repeat
Length = 621
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 217 VLSKIFAFRLEEEYRRNPFNIVSFFEW 137
VLS F R+ +E R +P ++FF W
Sbjct: 223 VLSDNFVIRVLKELREHPLKALAFFHW 249
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +2
Query: 449 VLATRKLSPVQRASSPSREPKK-LEFTINS----KNPSPDSYSSTLIVDADGRVYKLENN 613
++ T ++S V R E +K ++F + + +N + + + TL+ D K+ N
Sbjct: 65 LVKTLRISTVGRKQEKEEEEEKSVKFKVRAVATVRNKNKEDFKETLVKHLDAFTDKIGRN 124
Query: 614 VVLSKGPSSIGPQILQSK 667
VVL + + P+ + K
Sbjct: 125 VVLELMSTQVDPKTNEPK 142
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -3
Query: 183 KNIVETHLIS*AFSNGNLTVNMK 115
K +V+ H++ + NGNLT+N++
Sbjct: 829 KELVDAHVLCYSHQNGNLTINVR 851
>At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 802
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Frame = +2
Query: 176 IFFLQPEGKDFAEYTLVESVQINADLSKSM*MARKVLRMELEPXXXXXLMLIHSYWSINT 355
++ + F TLV+++ ++++ + +K+L ++P +IH Y +
Sbjct: 616 MYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGK 675
Query: 356 RMDLKG--RKRATKSKRKAIW-QRQKRYNILGHCVLATRKLSPVQRASSPS 499
DL K ++ K + I+ Q ++ +LG A L V R +S S
Sbjct: 676 VDDLVAILEKMISRQKCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRS 726
>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
catalytic subunit, putative similar to SP|Q07864 DNA
polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
polymerase II subunit A) {Homo sapiens}; contains Pfam
profiles: PF03175 DNA polymerase type B, organellar and
viral, PF00136 DNA polymerase family B, PF03104 DNA
polymerase family B, exonuclease domain
Length = 2271
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 182 FLQPEGKDFAEYTLVESVQINADLSKSM 265
FLQ +GKD A+ L++ + ++ +SKS+
Sbjct: 1008 FLQNQGKDIADSELLDYISESSTMSKSL 1035
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,153,049
Number of Sequences: 28952
Number of extensions: 350511
Number of successful extensions: 1025
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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