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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0777
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43620.1 68418.m05332 S-locus protein-related contains some s...    32   0.46 
At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family pr...    31   0.80 
At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family pr...    31   0.80 
At3g09670.1 68416.m01146 PWWP domain-containing protein                30   1.4  
At2g45620.1 68415.m05672 nucleotidyltransferase family protein l...    30   1.4  
At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase fa...    30   1.4  
At1g64570.1 68414.m07319 expressed protein                             30   1.9  
At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containi...    29   2.4  
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro...    29   3.2  
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila...    29   4.3  
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila...    29   4.3  
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila...    29   4.3  
At1g17980.2 68414.m02224 nucleotidyltransferase family protein c...    29   4.3  
At1g17980.1 68414.m02225 nucleotidyltransferase family protein c...    29   4.3  
At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein ...    28   5.7  
At1g48620.1 68414.m05439 histone H1/H5 family protein weak simil...    28   5.7  
At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containi...    28   7.5  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   7.5  
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina...    27   9.9  
At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containi...    27   9.9  
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat...    27   9.9  

>At5g43620.1 68418.m05332 S-locus protein-related contains some
           similarity to S-locus protein 4 GI:6069478 from
           [Brassica rapa]
          Length = 410

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +1

Query: 367 EGEKKSHEVEAKGNMAKAKALQYPWTLRSRHTKTISSSKGKLPKPRT*ETGVHYKLQESV 546
           E EKK+ E     ++    +   P +L  RH   I S    +P+  T   GV +K QE  
Sbjct: 204 EKEKKTSEASNNDSLPVGLSFDNPSSLNVRHESVIKSLYSDMPRQCT-SCGVRFKCQEEH 262

Query: 547 SGLIQ*HAHR 576
           S  +  H  +
Sbjct: 263 SKHMDWHVRK 272


>At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 485

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 512 KLEFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVLSKGPSSIGPQILQSKLEQT 679
           K EF+   +NP  D+Y S      D RV    +  ++S GP+S  P  +     QT
Sbjct: 6   KDEFSAEKRNP--DNYDSVNNPSGDWRVDSYPSENLISAGPASCSPSQMMDSFGQT 59


>At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 486

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 512 KLEFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVLSKGPSSIGPQILQSKLEQT 679
           K EF+   +NP  D+Y S      D RV    +  ++S GP+S  P  +     QT
Sbjct: 6   KDEFSAEKRNP--DNYDSVNNPSGDWRVDSYPSENLISAGPASCSPSQMMDSFGQT 59


>At3g09670.1 68416.m01146 PWWP domain-containing protein
          Length = 726

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 28/85 (32%), Positives = 40/85 (47%)
 Frame = -3

Query: 297 SSILKTFLAIHIDFDKSALICTDSTSVYSAKSLPSGWRKNIVETHLIS*AFSNGNLTVNM 118
           +SILK    +H       L C+DSTS  +AKS  SG  K++ E      A S   ++ + 
Sbjct: 553 ASILKVANQMHCSTPTRLLPCSDSTSKKAAKSNGSG--KSLQEKPKAE-ALSAREISPST 609

Query: 117 KLSLNFFSPFSISLISRTPASSNEI 43
            LS    SP + S+   T   SN +
Sbjct: 610 TLS----SPHAASVTKTTSGKSNSV 630


>At2g45620.1 68415.m05672 nucleotidyltransferase family protein low
           similarity to SP|O13833| Caffeine-induced death protein
           1 {Schizosaccharomyces pombe}; contains Pfam profiles
           PF03828: PAP/25A associated domain, PF01909:
           Nucleotidyltransferase domain
          Length = 764

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +2

Query: 32  YGDDISFELAGVREIKLIEKGEKKF-----NDNFILTVRLPFEKAHDIKWVSTIFFLQPE 196
           Y  D ++ +  VR   ++ K EK +     ND  ++ +  PFE +HD+  V   F ++  
Sbjct: 669 YAHDYAYNVVSVRTGSILGKREKDWTRRVGNDRHLICIEDPFETSHDLGRVVDKFSIRVL 728

Query: 197 GKDF 208
            ++F
Sbjct: 729 REEF 732


>At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|O43520], Mus musculus [SP|P70704]; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1240

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 431 NILGHCVLATRKLSPVQRASSPSREPKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLEN 610
           N+ G   L  ++      A       +    TI  ++P+P+ Y+    ++ DG+VY L+ 
Sbjct: 197 NLDGETNLKVKRCLDATLALEKDESFQNFSGTIKCEDPNPNLYTFVGNLECDGQVYPLDP 256

Query: 611 NVVL 622
           N +L
Sbjct: 257 NQIL 260


>At1g64570.1 68414.m07319 expressed protein
          Length = 1239

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +1

Query: 271 GKKSLK-DGTGTIKFLVPHVDPFILEYKYKNGLEGEKKSHEVEA 399
           G K  K D T   KF+VP+ DP +L  +++  L G +KS++++A
Sbjct: 578 GLKYFKYDWTSVWKFVVPYRDPSLLPRQWRTAL-GIQKSYKLDA 620


>At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 492

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 506 PKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLE 607
           PK LE  +  +N +PD+YS  + ++A G +Y LE
Sbjct: 181 PKVLE-EMKEENVAPDNYSYRICINAFGAMYDLE 213


>At3g25500.1 68416.m03171 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 1051

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = +2

Query: 455 ATRKLSPVQRASSPSREPKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVLSKGP 634
           A R  SP   +SS    P+K        +P   S +S  +  +  R +   +++ +S   
Sbjct: 456 ALRSRSPSSSSSSVCSSPEKASHKSPVTSPKLSSRNSQSLSSSPDRDFS--HSLDVSPRI 513

Query: 635 SSIGPQILQSKL 670
           S+I PQILQS++
Sbjct: 514 SNISPQILQSRV 525


>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 341 WSINTRMDLKGRKRATKSKRKAIWQRQKRYN 433
           W++  + +L+  K+    KRK I+ R K+Y+
Sbjct: 24  WALAKKQELEAAKKQNAEKRKLIFNRAKQYS 54


>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 341 WSINTRMDLKGRKRATKSKRKAIWQRQKRYN 433
           W++  + +L+  K+    KRK I+ R K+Y+
Sbjct: 24  WALAKKQELEAAKKQNAEKRKLIFNRAKQYS 54


>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 341 WSINTRMDLKGRKRATKSKRKAIWQRQKRYN 433
           W++  + +L+  K+    KRK I+ R K+Y+
Sbjct: 24  WALAKKQELEAAKKQNAEKRKLIFNRAKQYS 54


>At1g17980.2 68414.m02224 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain
          Length = 586

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 450 FSPHENYLQFKGQAPQAENLRNWSSL*TPRIRLRTHTVARSS*ML 584
           F  ++NYLQ    A   ++LR W      R+R  T  + R   ML
Sbjct: 233 FEAYKNYLQIDISAANVDDLRKWKGWVESRLRQLTLKIERHFKML 277


>At1g17980.1 68414.m02225 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain
          Length = 713

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 450 FSPHENYLQFKGQAPQAENLRNWSSL*TPRIRLRTHTVARSS*ML 584
           F  ++NYLQ    A   ++LR W      R+R  T  + R   ML
Sbjct: 360 FEAYKNYLQIDISAANVDDLRKWKGWVESRLRQLTLKIERHFKML 404


>At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type,
           domain; similar to S-locus protein 4 (GI:6069478)
           [Brassica rapa]; similar to Pre-mRNA cleavage complex II
           protein Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo
           sapiens]
          Length = 416

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = +1

Query: 367 EGEKKSHEVEAKGNMAKAKALQYPWTLRSRHTKTISSSKGKLPKPRT*ETGVHYKLQESV 546
           E EKK+ E     ++    +   P +L  RH   I S    +P+  +   G+ +K QE  
Sbjct: 211 EKEKKTLEASNSDSLPVGLSFDNPSSLNVRHESVIKSLYSDMPRQCS-SCGLRFKCQEEH 269

Query: 547 SGLIQ*HAHR 576
           S  +  H  +
Sbjct: 270 SKHMDWHVRK 279


>At1g48620.1 68414.m05439 histone H1/H5 family protein weak
           similarity to HMG I/Y like protein [Glycine max]
           GI:15706274, HMG-I/Y protein HMGa [Triticum aestivum]
           GI:20502966; contains Pfam profiles PF00538: linker
           histone H1 and H5 family, PF02178: AT hook motif
          Length = 479

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 452 LATRKLSPVQRASSPSREPKKLEFTINSKNPSPD 553
           LA+    P   + +PS EP + +F +N   P PD
Sbjct: 141 LASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPD 174


>At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containing
           protein vacontains Pfam profile PF01535: PPR repeat
          Length = 621

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 217 VLSKIFAFRLEEEYRRNPFNIVSFFEW 137
           VLS  F  R+ +E R +P   ++FF W
Sbjct: 223 VLSDNFVIRVLKELREHPLKALAFFHW 249


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +2

Query: 449 VLATRKLSPVQRASSPSREPKK-LEFTINS----KNPSPDSYSSTLIVDADGRVYKLENN 613
           ++ T ++S V R      E +K ++F + +    +N + + +  TL+   D    K+  N
Sbjct: 65  LVKTLRISTVGRKQEKEEEEEKSVKFKVRAVATVRNKNKEDFKETLVKHLDAFTDKIGRN 124

Query: 614 VVLSKGPSSIGPQILQSK 667
           VVL    + + P+  + K
Sbjct: 125 VVLELMSTQVDPKTNEPK 142


>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
           family protein low similarity to phosphatidylinositol
           3,5-kinase [Candida albicans] GI:14571648; contains Pfam
           profile PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase
          Length = 1648

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 183 KNIVETHLIS*AFSNGNLTVNMK 115
           K +V+ H++  +  NGNLT+N++
Sbjct: 829 KELVDAHVLCYSHQNGNLTINVR 851


>At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 802

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
 Frame = +2

Query: 176 IFFLQPEGKDFAEYTLVESVQINADLSKSM*MARKVLRMELEPXXXXXLMLIHSYWSINT 355
           ++ +      F   TLV+++     ++++  + +K+L   ++P       +IH Y  +  
Sbjct: 616 MYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGK 675

Query: 356 RMDLKG--RKRATKSKRKAIW-QRQKRYNILGHCVLATRKLSPVQRASSPS 499
             DL     K  ++ K + I+ Q  ++  +LG    A   L  V R +S S
Sbjct: 676 VDDLVAILEKMISRQKCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRS 726


>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
            catalytic subunit, putative similar to SP|Q07864 DNA
            polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
            polymerase II subunit A) {Homo sapiens}; contains Pfam
            profiles: PF03175 DNA polymerase type B, organellar and
            viral, PF00136 DNA polymerase family B, PF03104 DNA
            polymerase family B, exonuclease domain
          Length = 2271

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 182  FLQPEGKDFAEYTLVESVQINADLSKSM 265
            FLQ +GKD A+  L++ +  ++ +SKS+
Sbjct: 1008 FLQNQGKDIADSELLDYISESSTMSKSL 1035


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,153,049
Number of Sequences: 28952
Number of extensions: 350511
Number of successful extensions: 1025
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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