BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0777 (740 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g43620.1 68418.m05332 S-locus protein-related contains some s... 32 0.46 At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family pr... 31 0.80 At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family pr... 31 0.80 At3g09670.1 68416.m01146 PWWP domain-containing protein 30 1.4 At2g45620.1 68415.m05672 nucleotidyltransferase family protein l... 30 1.4 At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase fa... 30 1.4 At1g64570.1 68414.m07319 expressed protein 30 1.9 At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containi... 29 2.4 At3g25500.1 68416.m03171 formin homology 2 domain-containing pro... 29 3.2 At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 29 4.3 At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 29 4.3 At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 29 4.3 At1g17980.2 68414.m02224 nucleotidyltransferase family protein c... 29 4.3 At1g17980.1 68414.m02225 nucleotidyltransferase family protein c... 29 4.3 At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein ... 28 5.7 At1g48620.1 68414.m05439 histone H1/H5 family protein weak simil... 28 5.7 At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containi... 28 7.5 At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 7.5 At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 27 9.9 At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containi... 27 9.9 At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat... 27 9.9 >At5g43620.1 68418.m05332 S-locus protein-related contains some similarity to S-locus protein 4 GI:6069478 from [Brassica rapa] Length = 410 Score = 31.9 bits (69), Expect = 0.46 Identities = 20/70 (28%), Positives = 30/70 (42%) Frame = +1 Query: 367 EGEKKSHEVEAKGNMAKAKALQYPWTLRSRHTKTISSSKGKLPKPRT*ETGVHYKLQESV 546 E EKK+ E ++ + P +L RH I S +P+ T GV +K QE Sbjct: 204 EKEKKTSEASNNDSLPVGLSFDNPSSLNVRHESVIKSLYSDMPRQCT-SCGVRFKCQEEH 262 Query: 547 SGLIQ*HAHR 576 S + H + Sbjct: 263 SKHMDWHVRK 272 >At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain Length = 485 Score = 31.1 bits (67), Expect = 0.80 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = +2 Query: 512 KLEFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVLSKGPSSIGPQILQSKLEQT 679 K EF+ +NP D+Y S D RV + ++S GP+S P + QT Sbjct: 6 KDEFSAEKRNP--DNYDSVNNPSGDWRVDSYPSENLISAGPASCSPSQMMDSFGQT 59 >At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain Length = 486 Score = 31.1 bits (67), Expect = 0.80 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = +2 Query: 512 KLEFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVLSKGPSSIGPQILQSKLEQT 679 K EF+ +NP D+Y S D RV + ++S GP+S P + QT Sbjct: 6 KDEFSAEKRNP--DNYDSVNNPSGDWRVDSYPSENLISAGPASCSPSQMMDSFGQT 59 >At3g09670.1 68416.m01146 PWWP domain-containing protein Length = 726 Score = 30.3 bits (65), Expect = 1.4 Identities = 28/85 (32%), Positives = 40/85 (47%) Frame = -3 Query: 297 SSILKTFLAIHIDFDKSALICTDSTSVYSAKSLPSGWRKNIVETHLIS*AFSNGNLTVNM 118 +SILK +H L C+DSTS +AKS SG K++ E A S ++ + Sbjct: 553 ASILKVANQMHCSTPTRLLPCSDSTSKKAAKSNGSG--KSLQEKPKAE-ALSAREISPST 609 Query: 117 KLSLNFFSPFSISLISRTPASSNEI 43 LS SP + S+ T SN + Sbjct: 610 TLS----SPHAASVTKTTSGKSNSV 630 >At2g45620.1 68415.m05672 nucleotidyltransferase family protein low similarity to SP|O13833| Caffeine-induced death protein 1 {Schizosaccharomyces pombe}; contains Pfam profiles PF03828: PAP/25A associated domain, PF01909: Nucleotidyltransferase domain Length = 764 Score = 30.3 bits (65), Expect = 1.4 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = +2 Query: 32 YGDDISFELAGVREIKLIEKGEKKF-----NDNFILTVRLPFEKAHDIKWVSTIFFLQPE 196 Y D ++ + VR ++ K EK + ND ++ + PFE +HD+ V F ++ Sbjct: 669 YAHDYAYNVVSVRTGSILGKREKDWTRRVGNDRHLICIEDPFETSHDLGRVVDKFSIRVL 728 Query: 197 GKDF 208 ++F Sbjct: 729 REEF 732 >At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase family protein similar to Potential phospholipid-transporting ATPase (EC 3.6.3.1) from Homo sapiens [SP|O43520], Mus musculus [SP|P70704]; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase Length = 1240 Score = 30.3 bits (65), Expect = 1.4 Identities = 16/64 (25%), Positives = 30/64 (46%) Frame = +2 Query: 431 NILGHCVLATRKLSPVQRASSPSREPKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLEN 610 N+ G L ++ A + TI ++P+P+ Y+ ++ DG+VY L+ Sbjct: 197 NLDGETNLKVKRCLDATLALEKDESFQNFSGTIKCEDPNPNLYTFVGNLECDGQVYPLDP 256 Query: 611 NVVL 622 N +L Sbjct: 257 NQIL 260 >At1g64570.1 68414.m07319 expressed protein Length = 1239 Score = 29.9 bits (64), Expect = 1.9 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Frame = +1 Query: 271 GKKSLK-DGTGTIKFLVPHVDPFILEYKYKNGLEGEKKSHEVEA 399 G K K D T KF+VP+ DP +L +++ L G +KS++++A Sbjct: 578 GLKYFKYDWTSVWKFVVPYRDPSLLPRQWRTAL-GIQKSYKLDA 620 >At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containing protein low similarity to DNA-binding protein [Triticum aestivum] GI:6958202; contains Pfam profile PF01535: PPR repeat Length = 492 Score = 29.5 bits (63), Expect = 2.4 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +2 Query: 506 PKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLE 607 PK LE + +N +PD+YS + ++A G +Y LE Sbjct: 181 PKVLE-EMKEENVAPDNYSYRICINAFGAMYDLE 213 >At3g25500.1 68416.m03171 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 1051 Score = 29.1 bits (62), Expect = 3.2 Identities = 21/72 (29%), Positives = 35/72 (48%) Frame = +2 Query: 455 ATRKLSPVQRASSPSREPKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVLSKGP 634 A R SP +SS P+K +P S +S + + R + +++ +S Sbjct: 456 ALRSRSPSSSSSSVCSSPEKASHKSPVTSPKLSSRNSQSLSSSPDRDFS--HSLDVSPRI 513 Query: 635 SSIGPQILQSKL 670 S+I PQILQS++ Sbjct: 514 SNISPQILQSRV 525 >At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from [Arabidopsis thaliana] Length = 244 Score = 28.7 bits (61), Expect = 4.3 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = +2 Query: 341 WSINTRMDLKGRKRATKSKRKAIWQRQKRYN 433 W++ + +L+ K+ KRK I+ R K+Y+ Sbjct: 24 WALAKKQELEAAKKQNAEKRKLIFNRAKQYS 54 >At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from [Arabidopsis thaliana] Length = 244 Score = 28.7 bits (61), Expect = 4.3 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = +2 Query: 341 WSINTRMDLKGRKRATKSKRKAIWQRQKRYN 433 W++ + +L+ K+ KRK I+ R K+Y+ Sbjct: 24 WALAKKQELEAAKKQNAEKRKLIFNRAKQYS 54 >At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from [Arabidopsis thaliana] Length = 244 Score = 28.7 bits (61), Expect = 4.3 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = +2 Query: 341 WSINTRMDLKGRKRATKSKRKAIWQRQKRYN 433 W++ + +L+ K+ KRK I+ R K+Y+ Sbjct: 24 WALAKKQELEAAKKQNAEKRKLIFNRAKQYS 54 >At1g17980.2 68414.m02224 nucleotidyltransferase family protein contains Pfam profiles: PF01909 nucleotidyltransferase domain, PF04926 poly(A) polymerase predicted RNA binding domain Length = 586 Score = 28.7 bits (61), Expect = 4.3 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +3 Query: 450 FSPHENYLQFKGQAPQAENLRNWSSL*TPRIRLRTHTVARSS*ML 584 F ++NYLQ A ++LR W R+R T + R ML Sbjct: 233 FEAYKNYLQIDISAANVDDLRKWKGWVESRLRQLTLKIERHFKML 277 >At1g17980.1 68414.m02225 nucleotidyltransferase family protein contains Pfam profiles: PF01909 nucleotidyltransferase domain, PF04926 poly(A) polymerase predicted RNA binding domain Length = 713 Score = 28.7 bits (61), Expect = 4.3 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +3 Query: 450 FSPHENYLQFKGQAPQAENLRNWSSL*TPRIRLRTHTVARSS*ML 584 F ++NYLQ A ++LR W R+R T + R ML Sbjct: 360 FEAYKNYLQIDISAANVDDLRKWKGWVESRLRQLTLKIERHFKML 404 >At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein contains Prosite PS00028: Zinc finger, C2H2 type, domain; similar to S-locus protein 4 (GI:6069478) [Brassica rapa]; similar to Pre-mRNA cleavage complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens] Length = 416 Score = 28.3 bits (60), Expect = 5.7 Identities = 18/70 (25%), Positives = 30/70 (42%) Frame = +1 Query: 367 EGEKKSHEVEAKGNMAKAKALQYPWTLRSRHTKTISSSKGKLPKPRT*ETGVHYKLQESV 546 E EKK+ E ++ + P +L RH I S +P+ + G+ +K QE Sbjct: 211 EKEKKTLEASNSDSLPVGLSFDNPSSLNVRHESVIKSLYSDMPRQCS-SCGLRFKCQEEH 269 Query: 547 SGLIQ*HAHR 576 S + H + Sbjct: 270 SKHMDWHVRK 279 >At1g48620.1 68414.m05439 histone H1/H5 family protein weak similarity to HMG I/Y like protein [Glycine max] GI:15706274, HMG-I/Y protein HMGa [Triticum aestivum] GI:20502966; contains Pfam profiles PF00538: linker histone H1 and H5 family, PF02178: AT hook motif Length = 479 Score = 28.3 bits (60), Expect = 5.7 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +2 Query: 452 LATRKLSPVQRASSPSREPKKLEFTINSKNPSPD 553 LA+ P + +PS EP + +F +N P PD Sbjct: 141 LASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPD 174 >At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containing protein vacontains Pfam profile PF01535: PPR repeat Length = 621 Score = 27.9 bits (59), Expect = 7.5 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -2 Query: 217 VLSKIFAFRLEEEYRRNPFNIVSFFEW 137 VLS F R+ +E R +P ++FF W Sbjct: 223 VLSDNFVIRVLKELREHPLKALAFFHW 249 >At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140 [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis thaliana] Length = 926 Score = 27.9 bits (59), Expect = 7.5 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Frame = +2 Query: 449 VLATRKLSPVQRASSPSREPKK-LEFTINS----KNPSPDSYSSTLIVDADGRVYKLENN 613 ++ T ++S V R E +K ++F + + +N + + + TL+ D K+ N Sbjct: 65 LVKTLRISTVGRKQEKEEEEEKSVKFKVRAVATVRNKNKEDFKETLVKHLDAFTDKIGRN 124 Query: 614 VVLSKGPSSIGPQILQSK 667 VVL + + P+ + K Sbjct: 125 VVLELMSTQVDPKTNEPK 142 >At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase family protein low similarity to phosphatidylinositol 3,5-kinase [Candida albicans] GI:14571648; contains Pfam profile PF01504: Phosphatidylinositol-4-phosphate 5-Kinase Length = 1648 Score = 27.5 bits (58), Expect = 9.9 Identities = 9/23 (39%), Positives = 17/23 (73%) Frame = -3 Query: 183 KNIVETHLIS*AFSNGNLTVNMK 115 K +V+ H++ + NGNLT+N++ Sbjct: 829 KELVDAHVLCYSHQNGNLTINVR 851 >At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 802 Score = 27.5 bits (58), Expect = 9.9 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Frame = +2 Query: 176 IFFLQPEGKDFAEYTLVESVQINADLSKSM*MARKVLRMELEPXXXXXLMLIHSYWSINT 355 ++ + F TLV+++ ++++ + +K+L ++P +IH Y + Sbjct: 616 MYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGK 675 Query: 356 RMDLKG--RKRATKSKRKAIW-QRQKRYNILGHCVLATRKLSPVQRASSPS 499 DL K ++ K + I+ Q ++ +LG A L V R +S S Sbjct: 676 VDDLVAILEKMISRQKCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRS 726 >At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon catalytic subunit, putative similar to SP|Q07864 DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA polymerase II subunit A) {Homo sapiens}; contains Pfam profiles: PF03175 DNA polymerase type B, organellar and viral, PF00136 DNA polymerase family B, PF03104 DNA polymerase family B, exonuclease domain Length = 2271 Score = 27.5 bits (58), Expect = 9.9 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = +2 Query: 182 FLQPEGKDFAEYTLVESVQINADLSKSM 265 FLQ +GKD A+ L++ + ++ +SKS+ Sbjct: 1008 FLQNQGKDIADSELLDYISESSTMSKSL 1035 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,153,049 Number of Sequences: 28952 Number of extensions: 350511 Number of successful extensions: 1025 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 996 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1025 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1633819784 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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