Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0776
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    33   0.020
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    31   0.061
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    31   0.11 
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   1.3  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   2.3  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    25   4.0  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   4.0  
SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   4.0  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    25   5.3  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    25   7.0  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   7.0  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    24   9.3  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    24   9.3  

>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 33.1 bits (72), Expect = 0.020
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +3

Query: 369 EKLEDLGQQTQNQWDN--LENLGQQTQD 446
           EK+ED+ +++  QWDN  LENL  Q QD
Sbjct: 45  EKIEDINERSNPQWDNAGLENLLNQLQD 72


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 31.5 bits (68), Expect = 0.061
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 273 NQYFERAQKHDDQQITQQIQNSDDLQQENNQFEKLEDLG-QQTQNQWDNLE 422
           N Y E  + HD QQ +QQ++N +D   E NQ+E+ +    Q+  N+  +L+
Sbjct: 43  NAYNEHCKNHD-QQPSQQVRNMED---EANQYEQTDSSSDQEVMNEKQSLD 89


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 282 FERAQKHDDQQITQQIQNSDDLQQENNQFEKLEDLGQQTQNQWDNLE 422
           FE  +  DD+   QQ +  DD++ E N+ E +E+   + +N+  NL+
Sbjct: 725 FENEESDDDKIFEQQTKIEDDVKNE-NKTEPVEEQKSEEKNEQPNLK 770


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 312 QITQQIQNSDDLQQENNQFEKLEDLGQQTQNQWDNLENLGQQTQ 443
           Q+ +QIQN D L +    FE+        Q   + L NL QQ Q
Sbjct: 333 QVIRQIQNGDLLARYWKYFEESHKFDLNLQVYHEKLRNLVQQGQ 376


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 306 DQQITQQIQNSDDLQQENNQFEKLEDLGQQTQNQWDNLENL 428
           D  +  Q QN+  L+ E+      E+L QQ     DN++ L
Sbjct: 801 DDHVNMQSQNNTLLESESKLKTDCENLTQQNMTLIDNVQKL 841


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 312 QITQQIQNSDDLQQENNQFEKLEDLGQQTQNQWDNLE 422
           +I + I+N+D  +Q++  F K  +   Q ++   N+E
Sbjct: 517 KIQEMIENADKFKQQDKDFAKKLEAKSQLESYISNIE 553


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 256 HGHITLISISNEHKNMTTNKLHNRFRTLMIY-SKKIINSKNWKTSVNKLKIN 408
           H  ITL ++ N H ++ +    + F T  ++ + K ++S N   +    +++
Sbjct: 325 HSQITLSNVKNNHSHVGSQTKSHSFATPSVFDNNKPVSSDNHNNTTTSSQVH 376


>SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 249 PCPRS--YNVNQYFERAQKHDDQQITQQIQNSDDLQQENNQFEKLEDLGQQTQ 401
           P PRS   N N +F+R  +   +++  + ++ D L +++ +  K E +  +T+
Sbjct: 27  PSPRSGISNTNDFFKRIGRDTAEKVNGKFESWDGLFRKSTKTMKKEGIDVRTR 79


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = -2

Query: 262 DRGHGRSHVHHRFDSLWHSVTDVGCACIF 176
           D     S +  +F+  W+ ++ +G  C+F
Sbjct: 273 DPSAANSTIWSKFEDGWYQISKIGAQCVF 301


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/60 (16%), Positives = 27/60 (45%)
 Frame = +3

Query: 264 YNVNQYFERAQKHDDQQITQQIQNSDDLQQENNQFEKLEDLGQQTQNQWDNLENLGQQTQ 443
           +N + +      H++       +  + ++Q N + EK+E++  +T      L  L ++ +
Sbjct: 169 FNYDNFLSSQTVHEENTAALDSEIDELMKQINEKEEKIEEISDETDKLQKLLRELDEEKE 228


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 303 DDQQITQQIQNSDDLQQENNQFEKLEDLGQQTQN 404
           DD  + Q I     L Q+  +  K ED+ +Q QN
Sbjct: 362 DDDDLQQSIAMQRRLAQKRAKILKPEDVAEQLQN 395


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 181 YTHNQHQSLNAINCQICDEH 240
           YTHN H+ ++ I  ++ + H
Sbjct: 293 YTHNHHRRIHNIKARLLETH 312


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
 Frame = +3

Query: 285 ERAQK--HDDQQITQQI-QNSDDLQQENNQFEKLEDLGQQTQNQWDNLENLGQQTQD 446
           E+ QK   +D++I +++ Q+ DD +QE    E+ ED  Q T  + ++ E L  + +D
Sbjct: 20  EKRQKPLKNDKKIAEELPQDEDDYEQE----EENEDADQNTSVESES-EELDNENED 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.129    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,945
Number of Sequences: 5004
Number of extensions: 29120
Number of successful extensions: 117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)