Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0776
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   0.66 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   2.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.6  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 285 ERAQK-HDDQQITQQIQNSDDLQQENNQFEKLEDLG 389
           ER Q+ H D+  +QQ Q     QQ++ Q ++   +G
Sbjct: 76  EREQREHSDRVTSQQQQQQQQQQQQDQQQQQQSRMG 111


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +3

Query: 291 AQKHDDQQITQQIQNSDDLQQENNQFEKLEDLGQQTQNQWDNLENLGQQTQ 443
           A K  +QQ   Q Q     QQ+  Q        QQ Q Q    +   QQ Q
Sbjct: 408 AFKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQ 458


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 14/62 (22%), Positives = 22/62 (35%)
 Frame = +3

Query: 252 CPRSYNVNQYFERAQKHDDQQITQQIQNSDDLQQENNQFEKLEDLGQQTQNQWDNLENLG 431
           C R +N N   + A   +        QN+D+         +  D  Q    Q  N +N  
Sbjct: 419 CGRYHNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDN 478

Query: 432 QQ 437
           +Q
Sbjct: 479 KQ 480


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 129  NSCTNIDIKCKPFRF 173
            + CT ++ K KP++F
Sbjct: 1713 SGCTAVETKSKPYKF 1727



 Score = 21.0 bits (42), Expect = 6.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 262 HITLISISNEHKNMTTNKLHNRFRTLMIYSKKIINSKNWKTS 387
           H T+ S     K M + +L++R   L++    +  +K  KTS
Sbjct: 265 HFTIQSSVTTSKMMVSPRLYDRQNGLVLSRMNLTLAKMEKTS 306


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 256 GHGRSHVH 233
           GHG SH+H
Sbjct: 420 GHGHSHIH 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.129    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,669
Number of Sequences: 438
Number of extensions: 2078
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)