Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0775
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 29 0.54
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.95
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 28 1.7
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 28 1.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.2
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 2.9
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb... 26 5.0
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 26 6.7
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 6.7
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 25 8.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.8
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 29.5 bits (63), Expect = 0.54
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 500 TNYESPAPLKKIK-QEIAIAPAPSPNSVPMPVLAP 601
T Y PA + Q IAIAP P+PN +P + P
Sbjct: 222 TYYSIPAVNHPMAGQPIAIAPVPAPNQAALPPIPP 256
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 0.95
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 551 IAPAPSPNSVPMPVLAPLSSGP 616
I P P+P +P+P AP+ GP
Sbjct: 740 IVPTPAPAPIPVPPPAPIMGGP 761
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 446 NTTKRNCSHSNSKIKS*ETNYESPAPLKKIKQEIAIAPAPSPNSVP-MPVLAP 601
+ + ++ S ++ + S + ++ A + K K+++ APAP+P S P P +AP
Sbjct: 263 SASAKSTSAADQAVASSKPIKKAWASVAKSKKKVTPAPAPAPESEPSKPSIAP 315
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.9 bits (59), Expect = 1.7
Identities = 23/91 (25%), Positives = 43/91 (47%)
Frame = +2
Query: 317 TKIRYNDAINRSAIRTSTKNGSNSAEACHAGPRKENFNSKVNYNTTKRNCSHSNSKIKS* 496
+K+R +A +A ST + N+ A A +S+V + T++ ++S+ S
Sbjct: 71 SKLRAQEAAEAAANGGSTGDDVNATNANDATV-PATVSSEVTH-TSEGYADSNDSRPSSI 128
Query: 497 ETNYESPAPLKKIKQEIAIAPAPSPNSVPMP 589
+ ESPAP+ ++ A S N++ P
Sbjct: 129 SNSSESPAPINSATASMSPANNTSGNNITSP 159
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 539 QEIAIAPAPSPNSVPMPVLA-PLSSGPFSGLRPQQMLXRXTTSTLPNMKFRGTL 697
Q A P P P SVP P A P+ +GP S P L + ++PN R L
Sbjct: 1701 QMSAPTPPPPPMSVPPPPSAPPMPAGPPSA--PPPPLPASSAPSVPNPGDRSAL 1752
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.1 bits (57), Expect = 2.9
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Frame = +2
Query: 311 SATKIRYNDAINRSAIRTSTKNGSNSAEACHAGPR--KEN-FNSKVNYNTTKRNCSHSNS 481
S + N A + TS+ N S H R K+N ++++ ++ + S SN+
Sbjct: 128 SCQPLAVNTADTTVSHSTSSSNVPRSLNKIHDPSRFIKDNDVENRIHVSSASKVASISNT 187
Query: 482 KIKS*ETNYESPAPLKKIKQEIAIAPAPSPNSVPMPVL 595
K E+P + EI I P N++P P L
Sbjct: 188 S-KPNPIVSENPISATSVSIEIPIKPKELSNNLPFPRL 224
>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 353
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 441 LTFELKFSFLGPAWQASALFD 379
L F KF+ LG WQ S LFD
Sbjct: 182 LFFREKFTNLGHTWQNSILFD 202
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -3
Query: 207 YIVCSSRNSTPNDELTFRSYDRTFLFWHDPSLSFLNCSRL--RLSFYCGSNRGYSFLRI 37
Y+ +S S P ++ D T DP++SF NC + S +C R YS I
Sbjct: 556 YLKVNSETSLPTGDIVEWQNDITKPTKLDPNISFDNCFIVDREASKFCLDTRKYSLKNI 614
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Frame = +2
Query: 236 RNE*SHRTKKNSSDNT*NYH*---------TPNISATKIRYN 334
RN R K S DN NYH +PN S TKI YN
Sbjct: 244 RNSPDFRRKLRSRDNRPNYHLFDYYNEIASSPNPSTTKITYN 285
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 156 RSYDRTFLFWHDPSLSFLNCSRLR 85
+ Y R +L W PSL L+ R+R
Sbjct: 127 KQYYRLYLIWRIPSLHILDFERVR 150
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +2
Query: 536 KQEIAIAPAPSPNS---VPMP-VLAPLSSGPFSGLRP 634
K +A P P+P+ VP P V AP P SG+ P
Sbjct: 1144 KPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,471
Number of Sequences: 5004
Number of extensions: 56339
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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