Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0774
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   3.2  
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    26   5.6  

>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +1

Query: 508 RSKSNVAMNAWLPQASYPCGNFSGTLLKTLYTKGSIGRAFAVPMRTEH 651
           RS    +MN    Q  Y    F G + + L   GSI   FAVP++ EH
Sbjct: 377 RSYIRKSMNNVFLQFIYEREKFHG-IAELLEILGSIINGFAVPLKEEH 423


>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 4   IRHETIPSPDIELSYIRTFGAVMHVLRKKTDSIDLR 111
           +R++ I +  +E S   T   + H+  + TDSIDLR
Sbjct: 211 VRYKAIKNSTLEDSTNSTSDVLNHLESQPTDSIDLR 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,750
Number of Sequences: 5004
Number of extensions: 53901
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)