Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0774
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349...    33   0.16 
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.1  
07_03_0846 - 21983581-21986055                                         29   2.5  
01_06_1280 - 35959452-35960105                                         29   2.5  
08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624           29   3.3  
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224     29   4.4  
09_04_0407 + 17345382-17345579,17345711-17346235                       28   5.9  

>02_01_0486 -
           3495792-3496034,3496862-3496934,3497128-3497422,
           3497585-3497759,3498349-3498795,3499994-3500053
          Length = 430

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 353 VREEPQFRTFGSCTRPSGRWCEATIRGIMPER-LKAEASLAESGKDMLTVEPRESGGSKQ 177
           +   P     G   RP+    +++IRGI+P+R  KA++SL +  + +L +    S   +Q
Sbjct: 60  ISPSPNSARSGLPPRPNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQ 119

Query: 176 CDFTSRVSHS 147
              T+  S S
Sbjct: 120 VKATTSRSFS 129


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 245 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 111
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 103 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 252
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>01_06_1280 - 35959452-35960105
          Length = 217

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = -2

Query: 319 HALGRAAGGAKLPSAGLCLNASRPKPA*PNPAR 221
           HALG   GGA    AGLCL   +P P  P PA+
Sbjct: 90  HALG---GGAGADDAGLCL-GRQPTPPRPQPAK 118


>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
          Length = 528

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 508 RSKSNVAMNAWLPQASYPCGNFSGTLLKTLYTKGSIGRAFAVP 636
           +SK  + M  W    S   GN SG+LL     K   G +FA+P
Sbjct: 208 KSKRGLIMGIWNAHTSV--GNISGSLLAAFLLKFGWGWSFAIP 248


>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
          Length = 787

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +1

Query: 61  GAVMHVLRKKTDSID----LRDPNGLRRRVSRFECETRLVKSH 177
           G V+  L + TDS++    L +P+GL RRV  F  E+++   H
Sbjct: 340 GTVLRYLFQDTDSVNNSGGLLNPSGLLRRVRMFVPESQVTSMH 382


>09_04_0407 + 17345382-17345579,17345711-17346235
          Length = 240

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 297 VVRSYHPRDYA*TPQGRSQPSRIRQGYAHCGAP 199
           + + YHP+  A     +S  S IR+ YAHC  P
Sbjct: 4   LAQEYHPKLPATNHYCKSLSSLIRETYAHCHVP 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,773,039
Number of Sequences: 37544
Number of extensions: 393822
Number of successful extensions: 1097
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)