Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0774
         (668 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for MG...    52   2e-06
BC016757-1|AAH16757.1|  220|Homo sapiens Sin3A-associated protei...    32   1.6  
AF055993-1|AAC33316.1|  220|Homo sapiens mSin3A associated polyp...    32   1.6  
AY750848-1|AAU81930.1| 1032|Homo sapiens RTN3-A1 protein.              30   6.5  
AY427821-1|AAR02474.1| 1013|Homo sapiens reticulon 3-A protein.        30   6.5  
AL356489-1|CAC88180.1|  130|Homo sapiens T cell receptor beta va...    30   6.5  
AF090928-1|AAF24043.1|  112|Homo sapiens PRO0470 protein.              30   8.6  

>BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for
           MGC:134704) protein.
          Length = 44

 Score = 51.6 bits (118), Expect = 2e-06
 Identities = 25/35 (71%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
 Frame = +1

Query: 511 SKSNVAMNAWLPQASYPCGNFSGT-LLKTLYTKGS 612
           SKS+VAMNAW PQASYPCGNFS T  LK   ++GS
Sbjct: 10  SKSDVAMNAWPPQASYPCGNFSDTSCLKPKRSEGS 44


>BC016757-1|AAH16757.1|  220|Homo sapiens Sin3A-associated protein,
           30kDa protein.
          Length = 220

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -2

Query: 310 GRAAG-GAKLPSAGLCLNASRPKPA*PNPARICSLWSPESR--EALNNVTLLVAFRIQNA 140
           G  AG GA++P AG    A  P  A P P ++C L     R   A  N +     +   +
Sbjct: 35  GTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLCCLREDGERCGRAAGNASFSKRIQKSIS 94

Query: 139 RRDVEAHLDRGDR 101
           ++ V+  LD+  R
Sbjct: 95  QKKVKIELDKSAR 107


>AF055993-1|AAC33316.1|  220|Homo sapiens mSin3A associated
           polypeptide p30 protein.
          Length = 220

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -2

Query: 310 GRAAG-GAKLPSAGLCLNASRPKPA*PNPARICSLWSPESR--EALNNVTLLVAFRIQNA 140
           G  AG GA++P AG    A  P  A P P ++C L     R   A  N +     +   +
Sbjct: 35  GTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLCCLREDGERCGRAAGNASFSKRIQKSIS 94

Query: 139 RRDVEAHLDRGDR 101
           ++ V+  LD+  R
Sbjct: 95  QKKVKIELDKSAR 107


>AY750848-1|AAU81930.1| 1032|Homo sapiens RTN3-A1 protein.
          Length = 1032

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = -1

Query: 290 EATIRGIMPERLKAEASLAESGKDMLTVEP------RESGGSKQCDFTSRVSHSKRETRR 129
           E   +GI+     A  +++E   D  T  P       ESGGS+  D  S+ S   +ET  
Sbjct: 660 ETRDKGIVDSERNAFKAISEKMTDFKTTPPVEVLHENESGGSEIKDIGSKYSEQSKETNG 719

Query: 128 RSPFG 114
             P G
Sbjct: 720 SEPLG 724


>AY427821-1|AAR02474.1| 1013|Homo sapiens reticulon 3-A protein.
          Length = 1013

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = -1

Query: 290 EATIRGIMPERLKAEASLAESGKDMLTVEP------RESGGSKQCDFTSRVSHSKRETRR 129
           E   +GI+     A  +++E   D  T  P       ESGGS+  D  S+ S   +ET  
Sbjct: 641 ETRDKGIVDSERNAFKAISEKMTDFKTTPPVEVLHENESGGSEIKDIGSKYSEQSKETNG 700

Query: 128 RSPFG 114
             P G
Sbjct: 701 SEPLG 705


>AL356489-1|CAC88180.1|  130|Homo sapiens T cell receptor beta
           variable 25/OR9-2 protein.
          Length = 130

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 407 SHDGLTPAHVPF*WVNNPTLGEFCF-AMIGRADIE 508
           S +G+TP H PF WVN+   G+ C  + + R  IE
Sbjct: 60  SRNGITP-HPPFLWVNSTEKGDLCSESTVSRIRIE 93


>AF090928-1|AAF24043.1|  112|Homo sapiens PRO0470 protein.
          Length = 112

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 505 RRSKSNVAMNAWLPQASYPC 564
           +R++SN+  N WLP  + PC
Sbjct: 5   KRTRSNINQNTWLPNRNLPC 24


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,253,929
Number of Sequences: 237096
Number of extensions: 2072040
Number of successful extensions: 4404
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4404
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)