Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0774
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    30   1.2  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    29   3.7  
At3g60750.1 68416.m06796 transketolase, putative strong similari...    28   6.5  
At2g17550.1 68415.m02031 expressed protein                             28   6.5  

>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 283 PSAGLCLNASRPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 113
           PS    L   RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 159 PSLSPNLQKERPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 302 GRWCEATIRGIMPERLKAEASLAESGKDMLTVEPRESGGSKQCD 171
           G W +  +     ++ K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At3g60750.1 68416.m06796 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -2

Query: 400 SFTLLMACRXXSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL 269
           + TLL A          ERN  FG   H +G    G  L S GL
Sbjct: 462 NMTLLKAFGDFQKATPEERNLRFGVREHGMGAICNGIALHSPGL 505


>At2g17550.1 68415.m02031 expressed protein
          Length = 765

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +1

Query: 67  VMHVLRKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLA 246
           V ++ +  T  + + D N LRR+++  E E ++      EP     + V +  PD   + 
Sbjct: 529 VDYLSQVSTPDVTVSDENELRRQINELESEVQVRTPVEEEPIQEIETIVDLGNPDKVFVR 588

Query: 247 SALRRSGI 270
             L  SG+
Sbjct: 589 DLLVASGL 596


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,696,298
Number of Sequences: 28952
Number of extensions: 298168
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)