Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0773
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    29   0.49 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    28   1.5  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   8.0  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   8.0  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    25   8.0  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 477  LQQKWVPLVYGRSWDASWS 533
            LQ  W+  VYGRSW   WS
Sbjct: 2194 LQNYWMSSVYGRSWAFMWS 2212


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 471  TDLQQKWVPLVYGRSWDASW 530
            T LQ  W+  +YGRSW   W
Sbjct: 2153 TILQNYWLSTLYGRSWKYLW 2172


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 555 HCAXKRPRSKKRPTTGRTRAVPIFAEDQSGAHR 457
           H   +RP+ ++R    R+ +V +F E QSG  R
Sbjct: 34  HFVDRRPQDRERERLIRSGSVFVFDEVQSGIKR 66


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 71  ISF*TKALKXFLFGFVINQRSFKWPRK 151
           I++ + A+  F+F +VI +R+  W RK
Sbjct: 761 INYSSWAIVGFIFNYVIRKRAIHWWRK 787


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 313 HDAESRQHVDAVLPHXSPL--ATVIATNTNTKCNSRDEHFPF 194
           +DA+ ++  D VL +  P   ATV+  + N  C S  EH P+
Sbjct: 584 YDADGKEIPDFVL-NREPYRHATVLVAHDNFGCGSSREHAPW 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,742
Number of Sequences: 5004
Number of extensions: 44478
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)