Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0773
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0368 + 15004949-15005659,15005789-15005848 31 0.89
09_05_0013 + 20067115-20067183,20067585-20067691,20067905-200680... 30 2.1
03_01_0128 + 995103-995174,996500-996606,996909-997041,997127-99... 29 2.7
06_03_0028 + 15659824-15661266 29 4.8
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 29 4.8
05_04_0441 - 21271106-21271495,21271608-21271751,21272639-212727... 28 6.3
02_04_0508 - 23550785-23551219,23551717-23552670 28 6.3
02_01_0149 + 1062044-1062997 28 6.3
01_03_0309 - 14886764-14888004,14888237-14888300 28 6.3
07_01_1161 - 10991245-10991283,10991389-10991427,10991513-109917... 28 8.3
01_06_1557 - 38231826-38233391 28 8.3
>04_03_0368 + 15004949-15005659,15005789-15005848
Length = 256
Score = 31.1 bits (67), Expect = 0.89
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +2
Query: 335 GVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPRRCALGLCAPD*SSAKMGTARVRPV 514
G GRR+ + ++ P P R + P R A PD + A G AR R
Sbjct: 25 GREGRRSGAEPAGAAAAAQPPDPAGREGKRGGAEPARAAAAARPPDPAGAG-GEARRRS- 82
Query: 515 VGRFLERGRLXAQWKFRD 568
GR + GR A+W+ D
Sbjct: 83 -GRQIRHGRGEARWRTTD 99
>09_05_0013 +
20067115-20067183,20067585-20067691,20067905-20068037,
20068163-20068306,20068415-20068573,20068710-20068783,
20068907-20068982,20069100-20069155,20069346-20069433,
20069508-20069648,20069737-20069886,20070165-20070398
Length = 476
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 453 SACVPQTDLQQKWVPLVYGRSWDASWSVVVCXHSGSFATRPSR 581
+AC T V V SWD + +VVC S +A P+R
Sbjct: 117 NACYGGTAALLNCVNWVESNSWDGRYGLVVCTDSAVYAEGPAR 159
>03_01_0128 +
995103-995174,996500-996606,996909-997041,997127-997270,
997589-997747,997865-997938,998024-998099,998476-998531,
998651-998738,998824-998964,999057-999206,999320-999476,
1001183-1001773,1002673-1003532
Length = 935
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 453 SACVPQTDLQQKWVPLVYGRSWDASWSVVVCXHSGSFATRPSR 581
+AC T V V SWD + +VVC S +A P+R
Sbjct: 118 NACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPAR 160
>06_03_0028 + 15659824-15661266
Length = 480
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -3
Query: 639 SEKARKQPRVLEMIWSSLQFGTVASRNFHCAXKRPRSKKRPTTGRTRAVPIFAEDQ 472
S+ R+ + E +W+ G V +HC R S + P G R V F D+
Sbjct: 247 SKLFRRPLPINESLWALPDDGNVRWSRYHCRGYRCLSARNPRRGYDRCVGCFDMDR 302
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -3
Query: 693 KAQRSSSTPESSLEKPFISEKARKQPRVLEMIWSSLQFGTVASRNFHCAXKRPRSKK 523
KA S P ++L + +S ++K V W L+ G A F+C + PR K
Sbjct: 8 KAPLGSRYPPAALNERILSSMSQKH--VAAHPWHDLEIGPGAPAVFNCVVEIPRGSK 62
>05_04_0441 -
21271106-21271495,21271608-21271751,21272639-21272746,
21272846-21272859,21273103-21273154,21273592-21273656,
21274447-21274579,21275260-21275341,21275639-21275715,
21276037-21276093
Length = 373
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 523 LLGAWSFARTVEVSRRDRPELQGAPD-HFQNTRLLTRFLRN 642
L GA FA+ +EV+ P + APD H T L RF N
Sbjct: 243 LKGAVLFAKKLEVNYSKYPNITSAPDAHDYTTSSLNRFNSN 283
>02_04_0508 - 23550785-23551219,23551717-23552670
Length = 462
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 465 PQTDLQQKWVPLVYGRSWDASWSVVVCXHSGSFATRP 575
P LQ VP+V S DA+ V C H +FA+RP
Sbjct: 80 PLMRLQLGGVPVVVASSPDAAREVT-CTHDAAFASRP 115
>02_01_0149 + 1062044-1062997
Length = 317
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 346 PADTQHTVPRDHDAESRQHVDAVLPHXSP-LATVIATNTNTKCN-SRDEHFP 197
P ++ +VP D D + H +LP P A V+A NT + + RD P
Sbjct: 24 PGQSRGSVPADEDGRRQPHGHHLLPTSDPYAAVVVAGNTLARTHVVRDSEDP 75
>01_03_0309 - 14886764-14888004,14888237-14888300
Length = 434
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 580 ELQGAPDHFQNTRLLTR 630
EL+ APDHF +TR+L R
Sbjct: 89 ELERAPDHFNSTRILGR 105
>07_01_1161 -
10991245-10991283,10991389-10991427,10991513-10991738,
10991902-10992054,10992133-10992638,10992651-10993019,
10993107-10993553,10993752-10994339
Length = 788
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = -2
Query: 394 PAGQQPGIERGWECAPPADTQHTVPRDHD---AESRQHVDAVLPHXSPL 257
P G+ P APPA +H D+D E R D+ H PL
Sbjct: 442 PGGRPPKRPASAPSAPPAQDRHAQSYDYDTDFGEDRTEADSKAIHEPPL 490
>01_06_1557 - 38231826-38233391
Length = 521
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/63 (22%), Positives = 23/63 (36%)
Frame = -2
Query: 385 QQPGIERGWECAPPADTQHTVPRDHDAESRQHVDAVLPHXSPLATVIATNTNTKCNSRDE 206
+QP R W C PPA + P + ++ P + V+ + N +E
Sbjct: 337 RQPASSRWWRCTPPAPSSPLAPIASNGDNSSKASPAEPAPAGALVVVDDHMADFLNLGEE 396
Query: 205 HFP 197
P
Sbjct: 397 STP 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,775,090
Number of Sequences: 37544
Number of extensions: 346319
Number of successful extensions: 1110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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