BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0773 (704 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_21033| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2 SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 29 3.7 SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 29 3.7 SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7 SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9 SB_48661| Best HMM Match : rve (HMM E-Value=5.7e-17) 29 4.9 SB_19905| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9 SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30) 28 6.4 SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4 SB_37538| Best HMM Match : zf-CCHC (HMM E-Value=0.0011) 28 6.4 SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) 28 8.5 SB_16404| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) 28 8.5 >SB_21033| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 246 Score = 30.7 bits (66), Expect = 1.2 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +2 Query: 308 VVVAWDSVLGVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPRRCAL 454 V V S GR+A S + L +RR +P S +C R++ RRCA+ Sbjct: 190 VTVYEGSTENPKGRKASVLSGFQRLANRR-RPESAKDECRRENERRCAI 237 >SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) Length = 1120 Score = 29.1 bits (62), Expect = 3.7 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +2 Query: 356 LPTSLYSGLLSRRPQPRSRGAQCARDHPRR 445 LP S S S PQP S +RDHP R Sbjct: 296 LPLSNQSSSTSTTPQPSSPATPSSRDHPTR 325 >SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) Length = 3616 Score = 29.1 bits (62), Expect = 3.7 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +1 Query: 550 TVEVSRRDRPELQGAPDHFQNTRLLTRFLRNERLL***FRSRRR 681 T ++ R RPE Q +PD+ ++ LT + ++ + FR RRR Sbjct: 3394 TNNMAGRGRPEPQPSPDNTEDAHTLTSHMSSKAAICIHFRQRRR 3437 >SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1017 Score = 29.1 bits (62), Expect = 3.7 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +2 Query: 332 LGVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPR 442 L G+ A + S S+R QP R C+RDHPR Sbjct: 139 LRAPGKTAPQYAQRSETKSQRRQPPDRCGYCSRDHPR 175 >SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1571 Score = 28.7 bits (61), Expect = 4.9 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +2 Query: 332 LGVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPR 442 L G+ A + S S+R QP R C RDHPR Sbjct: 187 LRAPGKTAPQYAQRSETKSQRRQPPDRCGYCGRDHPR 223 >SB_48661| Best HMM Match : rve (HMM E-Value=5.7e-17) Length = 745 Score = 28.7 bits (61), Expect = 4.9 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +2 Query: 332 LGVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPR 442 L G+ A + S S+R QP R C RDHPR Sbjct: 22 LRAPGKTAPQYAQRSETKSQRRQPPDRCGYCGRDHPR 58 >SB_19905| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 587 Score = 28.7 bits (61), Expect = 4.9 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +2 Query: 332 LGVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPR 442 L G+ A + S S+R QP R C RDHPR Sbjct: 139 LRAPGKTAPQYAQRSETKSQRRQPPDRCGYCGRDHPR 175 >SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30) Length = 1191 Score = 28.3 bits (60), Expect = 6.4 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +2 Query: 332 LGVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPR 442 L G+ A + S S+R QP R C RDHPR Sbjct: 189 LRAPGKTAPRYAQRSETKSQRRQPPDRCGYCGRDHPR 225 >SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 965 Score = 28.3 bits (60), Expect = 6.4 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +2 Query: 527 LERGRLXAQWKFRDATVPNCKELQIISRTRGCLRAFSEMNGFSNDDSGVEDE 682 LE G+L F D E++++ + +G L AFSE+ +DD +D+ Sbjct: 406 LELGKLTGCCDFADNVFKFGNEIEVL-QMKGRLEAFSEIESDDDDDDEDDDD 456 >SB_37538| Best HMM Match : zf-CCHC (HMM E-Value=0.0011) Length = 215 Score = 28.3 bits (60), Expect = 6.4 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +2 Query: 332 LGVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPR 442 L G+ A + S S+R QP R C RDHPR Sbjct: 47 LRAPGKTAPQYAQRSETKSQRRQPPDRCEYCGRDHPR 83 >SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) Length = 890 Score = 27.9 bits (59), Expect = 8.5 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +2 Query: 386 SRRPQPRSRGAQCARDHPR 442 S+R QP R C RDHPR Sbjct: 58 SQRRQPPDRCGYCGRDHPR 76 >SB_16404| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) Length = 765 Score = 27.9 bits (59), Expect = 8.5 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +2 Query: 386 SRRPQPRSRGAQCARDHPR 442 S+R QP R C RDHPR Sbjct: 40 SQRRQPPDRCGYCGRDHPR 58 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,201,858 Number of Sequences: 59808 Number of extensions: 390178 Number of successful extensions: 3663 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3497 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3660 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1853669818 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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