Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0773
(704 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21033| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 29 3.7
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 29 3.7
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_48661| Best HMM Match : rve (HMM E-Value=5.7e-17) 29 4.9
SB_19905| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30) 28 6.4
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_37538| Best HMM Match : zf-CCHC (HMM E-Value=0.0011) 28 6.4
SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) 28 8.5
SB_16404| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) 28 8.5
>SB_21033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 308 VVVAWDSVLGVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPRRCAL 454
V V S GR+A S + L +RR +P S +C R++ RRCA+
Sbjct: 190 VTVYEGSTENPKGRKASVLSGFQRLANRR-RPESAKDECRRENERRCAI 237
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 356 LPTSLYSGLLSRRPQPRSRGAQCARDHPRR 445
LP S S S PQP S +RDHP R
Sbjct: 296 LPLSNQSSSTSTTPQPSSPATPSSRDHPTR 325
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 550 TVEVSRRDRPELQGAPDHFQNTRLLTRFLRNERLL***FRSRRR 681
T ++ R RPE Q +PD+ ++ LT + ++ + FR RRR
Sbjct: 3394 TNNMAGRGRPEPQPSPDNTEDAHTLTSHMSSKAAICIHFRQRRR 3437
>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 332 LGVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPR 442
L G+ A + S S+R QP R C+RDHPR
Sbjct: 139 LRAPGKTAPQYAQRSETKSQRRQPPDRCGYCSRDHPR 175
>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1571
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 332 LGVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPR 442
L G+ A + S S+R QP R C RDHPR
Sbjct: 187 LRAPGKTAPQYAQRSETKSQRRQPPDRCGYCGRDHPR 223
>SB_48661| Best HMM Match : rve (HMM E-Value=5.7e-17)
Length = 745
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 332 LGVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPR 442
L G+ A + S S+R QP R C RDHPR
Sbjct: 22 LRAPGKTAPQYAQRSETKSQRRQPPDRCGYCGRDHPR 58
>SB_19905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 332 LGVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPR 442
L G+ A + S S+R QP R C RDHPR
Sbjct: 139 LRAPGKTAPQYAQRSETKSQRRQPPDRCGYCGRDHPR 175
>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
Length = 1191
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 332 LGVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPR 442
L G+ A + S S+R QP R C RDHPR
Sbjct: 189 LRAPGKTAPRYAQRSETKSQRRQPPDRCGYCGRDHPR 225
>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 527 LERGRLXAQWKFRDATVPNCKELQIISRTRGCLRAFSEMNGFSNDDSGVEDE 682
LE G+L F D E++++ + +G L AFSE+ +DD +D+
Sbjct: 406 LELGKLTGCCDFADNVFKFGNEIEVL-QMKGRLEAFSEIESDDDDDDEDDDD 456
>SB_37538| Best HMM Match : zf-CCHC (HMM E-Value=0.0011)
Length = 215
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 332 LGVSGRRALPTSLYSGLLSRRPQPRSRGAQCARDHPR 442
L G+ A + S S+R QP R C RDHPR
Sbjct: 47 LRAPGKTAPQYAQRSETKSQRRQPPDRCEYCGRDHPR 83
>SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)
Length = 890
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 386 SRRPQPRSRGAQCARDHPR 442
S+R QP R C RDHPR
Sbjct: 58 SQRRQPPDRCGYCGRDHPR 76
>SB_16404| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)
Length = 765
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 386 SRRPQPRSRGAQCARDHPR 442
S+R QP R C RDHPR
Sbjct: 40 SQRRQPPDRCGYCGRDHPR 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,201,858
Number of Sequences: 59808
Number of extensions: 390178
Number of successful extensions: 3663
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3660
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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