Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0773
         (704 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein prot...    23   9.4  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   9.4  

>AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein
           protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 348 RPLTPSTLSHATTTPRVASMSTRFYRT 268
           RP T +T    TTT   A+ +T+F  T
Sbjct: 109 RPTTTTTTDWITTTTTEATTTTKFPTT 135


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
 Frame = -3

Query: 642  ISEKARKQPRVLEMIWSSLQFGTVASRNFHCAXKRPRS-KKRPTTGRTRAVPIFAE-DQS 469
            I E ARK  +VL+ +W   +       +      R  +    P  G   +V   AE  +S
Sbjct: 1005 IQEAARKITKVLQQLWREDELQLNLQAHLAALPTRAAAVDAGPLDGEQVSVDGVAELFRS 1064

Query: 468  GAHRPRAQRRG*SRA 424
               R R  RRG  RA
Sbjct: 1065 NRGRARRTRRGRRRA 1079


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,215
Number of Sequences: 2352
Number of extensions: 12107
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71922660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)