Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0773
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64608-5|AAB04596.1|  393|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF100657-5|AAC68960.1|  451|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF047663-1|AAC04453.2|  322|Caenorhabditis elegans Delta/serrate...    27   9.9  

>U64608-5|AAB04596.1|  393|Caenorhabditis elegans Hypothetical
           protein T22B7.7 protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 598 LELLAIRDGRVAKLPLCXQTTTLQEASHDRPYTS 497
           +EL  I+DG V       +TTT+ +  H+ PY S
Sbjct: 240 IELPVIKDGEVTMNSTNVETTTIAQPEHENPYGS 273


>AF100657-5|AAC68960.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C12.1 protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -3

Query: 669 PESSLEKPFISEKARKQPRVLEMIWS 592
           P S+ ++PF+++K  ++P +L  IW+
Sbjct: 424 PYSATDEPFVTDKKHEKPDILGCIWT 449


>AF047663-1|AAC04453.2|  322|Caenorhabditis elegans
           Delta/serrate/lag-2 domain protein2 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = -2

Query: 172 GHLTXNSFPRPLETPLINYETEQEXF*SFCLKRNSRDVTHVAVQRAIPRCVL 17
           G +  +  PRP +  ++  + E+  F  +C K    D  H+   R   + V+
Sbjct: 102 GIINVDQLPRPFDGMVVKVKCERNWFGEYCDKYCDEDAAHLVGMRCNKKGVM 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,327,496
Number of Sequences: 27780
Number of extensions: 267801
Number of successful extensions: 776
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)