Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0773
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11820.2 68417.m01882 hydroxymethylglutaryl-CoA synthase / HM...    29   2.3  
At4g11820.1 68417.m01881 hydroxymethylglutaryl-CoA synthase / HM...    29   2.3  
At3g21750.1 68416.m02744 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.0  
At2g02540.1 68415.m00193 zinc finger homeobox family protein / Z...    29   4.0  
At1g14440.2 68414.m01713 zinc finger homeobox family protein / Z...    29   4.0  
At1g14440.1 68414.m01712 zinc finger homeobox family protein / Z...    29   4.0  
At4g15360.1 68417.m02348 cytochrome P450 family protein                28   5.2  
At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5) ide...    28   6.9  

>At4g11820.2 68417.m01882 hydroxymethylglutaryl-CoA synthase /
           HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A
           synthase identical to Hydroxymethylglutaryl-CoA synthase
           (EC 4.1.3.5) (HMG-CoA synthase)
           (3-hydroxy-3-methylglutaryl coenzyme A synthase)
           (Swiss-Prot:P54873) [Arabidopsis thaliana]
          Length = 461

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 453 SACVPQTDLQQKWVPLVYGRSWDASWSVVVCXHSGSFATRPSR 581
           +AC   T      V  V   SWD  + +V+C  S  +A  P+R
Sbjct: 115 NACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPAR 157


>At4g11820.1 68417.m01881 hydroxymethylglutaryl-CoA synthase /
           HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A
           synthase identical to Hydroxymethylglutaryl-CoA synthase
           (EC 4.1.3.5) (HMG-CoA synthase)
           (3-hydroxy-3-methylglutaryl coenzyme A synthase)
           (Swiss-Prot:P54873) [Arabidopsis thaliana]
          Length = 406

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 453 SACVPQTDLQQKWVPLVYGRSWDASWSVVVCXHSGSFATRPSR 581
           +AC   T      V  V   SWD  + +V+C  S  +A  P+R
Sbjct: 60  NACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPAR 102


>At3g21750.1 68416.m02744 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 473

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 450 PSACVPQTDLQQKWVPLVYGRS 515
           P+ C+P   L +KW P V GR+
Sbjct: 175 PAKCLPSVMLNKKWFPYVLGRA 196


>At2g02540.1 68415.m00193 zinc finger homeobox family protein /
           ZF-HD homeobox family protein contains Pfam domain,
           PF04770: ZF-HD protein dimerisation region
          Length = 310

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 263 SACNCHRNKHKHKMQFTRRTLSFYLIYL 180
           S CNCHRN H+ + +   +T  F+  YL
Sbjct: 124 SVCNCHRNFHRRETEGEEKT--FFSPYL 149


>At1g14440.2 68414.m01713 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 312

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 263 SACNCHRNKHKHKMQ 219
           SACNCHRN H+ +++
Sbjct: 127 SACNCHRNFHRKEVE 141


>At1g14440.1 68414.m01712 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 312

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 263 SACNCHRNKHKHKMQ 219
           SACNCHRN H+ +++
Sbjct: 127 SACNCHRNFHRKEVE 141


>At4g15360.1 68417.m02348 cytochrome P450 family protein
          Length = 435

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 626 RAFSEMNGFSNDDSGVEDERWALS 697
           R+FSE NG SN   G+ DE +ALS
Sbjct: 107 RSFSEDNGESNRVRGLVDETYALS 130


>At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5)
           identical to pseudo-response regulator 5 GI:10281006
           from [Arabidopsis thaliana]
          Length = 667

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 553 VEVSRRDRPELQGAPDHFQNTRLLTRFLRNER 648
           VEVS RD  +++ A   F  TRLL   L++++
Sbjct: 340 VEVSARDAVQMECAKSQFNETRLLANELQSKQ 371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,668,038
Number of Sequences: 28952
Number of extensions: 252142
Number of successful extensions: 754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)