BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0773 (704 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g11820.2 68417.m01882 hydroxymethylglutaryl-CoA synthase / HM... 29 2.3 At4g11820.1 68417.m01881 hydroxymethylglutaryl-CoA synthase / HM... 29 2.3 At3g21750.1 68416.m02744 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.0 At2g02540.1 68415.m00193 zinc finger homeobox family protein / Z... 29 4.0 At1g14440.2 68414.m01713 zinc finger homeobox family protein / Z... 29 4.0 At1g14440.1 68414.m01712 zinc finger homeobox family protein / Z... 29 4.0 At4g15360.1 68417.m02348 cytochrome P450 family protein 28 5.2 At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5) ide... 28 6.9 >At4g11820.2 68417.m01882 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase identical to Hydroxymethylglutaryl-CoA synthase (EC 4.1.3.5) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) (Swiss-Prot:P54873) [Arabidopsis thaliana] Length = 461 Score = 29.5 bits (63), Expect = 2.3 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +3 Query: 453 SACVPQTDLQQKWVPLVYGRSWDASWSVVVCXHSGSFATRPSR 581 +AC T V V SWD + +V+C S +A P+R Sbjct: 115 NACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPAR 157 >At4g11820.1 68417.m01881 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase identical to Hydroxymethylglutaryl-CoA synthase (EC 4.1.3.5) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) (Swiss-Prot:P54873) [Arabidopsis thaliana] Length = 406 Score = 29.5 bits (63), Expect = 2.3 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +3 Query: 453 SACVPQTDLQQKWVPLVYGRSWDASWSVVVCXHSGSFATRPSR 581 +AC T V V SWD + +V+C S +A P+R Sbjct: 60 NACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPAR 102 >At3g21750.1 68416.m02744 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 473 Score = 29.1 bits (62), Expect = 3.0 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 450 PSACVPQTDLQQKWVPLVYGRS 515 P+ C+P L +KW P V GR+ Sbjct: 175 PAKCLPSVMLNKKWFPYVLGRA 196 >At2g02540.1 68415.m00193 zinc finger homeobox family protein / ZF-HD homeobox family protein contains Pfam domain, PF04770: ZF-HD protein dimerisation region Length = 310 Score = 28.7 bits (61), Expect = 4.0 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -1 Query: 263 SACNCHRNKHKHKMQFTRRTLSFYLIYL 180 S CNCHRN H+ + + +T F+ YL Sbjct: 124 SVCNCHRNFHRRETEGEEKT--FFSPYL 149 >At1g14440.2 68414.m01713 zinc finger homeobox family protein / ZF-HD homeobox family protein Length = 312 Score = 28.7 bits (61), Expect = 4.0 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = -1 Query: 263 SACNCHRNKHKHKMQ 219 SACNCHRN H+ +++ Sbjct: 127 SACNCHRNFHRKEVE 141 >At1g14440.1 68414.m01712 zinc finger homeobox family protein / ZF-HD homeobox family protein Length = 312 Score = 28.7 bits (61), Expect = 4.0 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = -1 Query: 263 SACNCHRNKHKHKMQ 219 SACNCHRN H+ +++ Sbjct: 127 SACNCHRNFHRKEVE 141 >At4g15360.1 68417.m02348 cytochrome P450 family protein Length = 435 Score = 28.3 bits (60), Expect = 5.2 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +2 Query: 626 RAFSEMNGFSNDDSGVEDERWALS 697 R+FSE NG SN G+ DE +ALS Sbjct: 107 RSFSEDNGESNRVRGLVDETYALS 130 >At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5) identical to pseudo-response regulator 5 GI:10281006 from [Arabidopsis thaliana] Length = 667 Score = 27.9 bits (59), Expect = 6.9 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +1 Query: 553 VEVSRRDRPELQGAPDHFQNTRLLTRFLRNER 648 VEVS RD +++ A F TRLL L++++ Sbjct: 340 VEVSARDAVQMECAKSQFNETRLLANELQSKQ 371 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,668,038 Number of Sequences: 28952 Number of extensions: 252142 Number of successful extensions: 754 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 738 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 754 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1516419560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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