Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0772
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22801| Best HMM Match : Dynein_heavy (HMM E-Value=1.5e-14)          29   5.3  
SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_41099| Best HMM Match : VWA (HMM E-Value=0)                         28   9.3  
SB_24918| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_22801| Best HMM Match : Dynein_heavy (HMM E-Value=1.5e-14)
          Length = 478

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 393 GFPRKFLLTMDVFHGXY--GGNHSPRAIGMWILQQFHWWMDIKR-AIPQPW 536
           G  +  L T D +   +   GN+S RA  +++L  FH  M  +R  IPQ W
Sbjct: 103 GIKKNMLRTYDSWSPEFVQRGNNSTRAQALFVLSWFHAIMQERRNYIPQGW 153


>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 181  LSEEQKSFYWENGYLVIKELIDFTLL 258
            L+E+   FY  NG+ V+++L+D  LL
Sbjct: 1081 LTEKDVEFYNHNGFFVVRKLVDKELL 1106


>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3373

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 724 PAPINPFNWDHGVPTGP-VPMEPLMNLYPTGXLNRGK 617
           P PI P      VPT P VP  P   +YP     RGK
Sbjct: 103 PQPITPKPVPPTVPTRPPVPRPPAAAVYPLDKRRRGK 139


>SB_24918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 464 GYWDVDSSTVSLVDGH*TGYSTAMV 538
           G W +DSS + LV+ H  G ST+ V
Sbjct: 7   GSWSLDSSKIRLVNWHLNGKSTSYV 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,906,565
Number of Sequences: 59808
Number of extensions: 411578
Number of successful extensions: 845
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)