Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0772
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.3  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   3.1  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   3.1  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   3.1  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   3.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   4.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   4.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.3  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 2   VRRYLPLNKKFPS 40
           +RRYLP+ K FP+
Sbjct: 446 IRRYLPVLKNFPT 458


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 441 YGGNHSPRAIGMWI 482
           Y GN  PR++G WI
Sbjct: 122 YYGNFPPRSMGPWI 135


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 441 YGGNHSPRAIGMWI 482
           Y GN  PR++G WI
Sbjct: 122 YYGNFPPRSMGPWI 135


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 441 YGGNHSPRAIGMWI 482
           Y GN  PR++G WI
Sbjct: 122 YYGNFPPRSMGPWI 135


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 441 YGGNHSPRAIGMWI 482
           Y GN  PR++G WI
Sbjct: 355 YYGNFPPRSMGPWI 368


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 533 WLWNSPFNVHPPMKL 489
           W W +PF V P +K+
Sbjct: 179 WFWVTPFTVLPLLKV 193


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 533 WLWNSPFNVHPPMKL 489
           W W +PF V P +K+
Sbjct: 179 WFWVTPFTVLPLLKV 193


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 331 FKETGHFLRRNLKXWKNTL 387
           F+ T  + RRN   WKN +
Sbjct: 534 FQNTFCYFRRNAATWKNAV 552


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/54 (20%), Positives = 23/54 (42%)
 Frame = -2

Query: 745 ENGTLPXPAPINPFNWDHGVPTGPVPMEPLMNLYPTGXLNRGKIKINPWVPGRE 584
           + G+   P+P     WD   P     +  ++ + P+  +   +   +PW+  RE
Sbjct: 125 KTGSYDYPSP----EWDTVTPEAKNLINQMLTVNPSKRITASEALKHPWICQRE 174


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 313 VNYSFAIFXRKAAXFVNYIIK*NQL 239
           +N+++++       F NYIIK N +
Sbjct: 474 INFTYSLALSPDGQFGNYIIKNNSV 498


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,753
Number of Sequences: 438
Number of extensions: 5083
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)