Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0771
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   3.0  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   7.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   7.0  

>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 371 IDSKLNLFPKTTGVHDQTTRPTPPSY 448
           + S  +  P  +   D +T PTPP +
Sbjct: 125 VSSSTSSIPSPSTTDDLSTNPTPPPH 150


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 5  GARGRWQXGATSRPSPASCP 64
          G  G W   A+  P PA+ P
Sbjct: 32 GGGGFWLAAASGAPHPAALP 51


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
          ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 5  GARGRWQXGATSRPSPASCP 64
          G  G W   A+  P PA+ P
Sbjct: 32 GGGGFWLAAASGAPHPAALP 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,361
Number of Sequences: 336
Number of extensions: 2339
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)