Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0771
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    28   7.0  

>U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical
           protein F11G11.5 protein.
          Length = 223

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 108 PRYYXPPHATRTRTPASTPLNCL*REVRXQYTA 206
           P YY PP  T+TR P    +  + R VR Q  A
Sbjct: 124 PIYYQPPQITQTRLPQPAAIEQIVRAVRIQNPA 156


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 386  NLFPKTTGVHDQTTRPTPPSY 448
            N+ P TTG   Q TRPTP ++
Sbjct: 1443 NIAPSTTGHQSQQTRPTPTTH 1463


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 87  SPTAXXAPRYYXPPHATRTRTP 152
           SP    APRY  PP +T T TP
Sbjct: 159 SPDPKRAPRYSPPPSSTPTPTP 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,312,604
Number of Sequences: 27780
Number of extensions: 211499
Number of successful extensions: 369
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)