Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0769
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    35   0.078
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    33   0.24 
11_06_0476 + 24044255-24044431,24046902-24046958,24047095-240471...    29   2.9  
07_03_0574 - 19629875-19631032                                         28   9.0  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 34.7 bits (76), Expect = 0.078
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = +1

Query: 400 FFDAATEEREHATKLIDYLLMRG---KLTGSVTDLITYRAPPTRRGRAAHQPSSTPSSWR 570
           F +++ EER+HA KL+ Y  MRG   +L   VT L  +  P   +G A +      +  +
Sbjct: 130 FKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLTEFDHP--EKGDALYAMELALALEK 187

Query: 571 VXXXXXXXXXXXXXXXXFNDYHLVDYLSGEFLDEQ 675
           +                 ND  L D++  EFL+EQ
Sbjct: 188 LVNEKLHNLHSVASRC--NDPQLTDFVESEFLEEQ 220



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 284 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 400
           C   + +QI  E  AS  Y ++ AYF  D V   GFA +
Sbjct: 91  CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKF 129


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
 Frame = +1

Query: 400 FFDAATEEREHATKLIDYLLMRG---KLTGSVTDLITYRAPPTRRGRAAHQPSSTPSSWR 570
           F +++ EER+HA KLI Y  MRG   +L   VT L  +  P   +G A +          
Sbjct: 162 FKESSDEERDHAEKLIKYQNMRGGRVRLQSIVTPLTEFDHP--EKGDALY--------GE 211

Query: 571 VXXXXXXXXXXXXXXXXFNDYHLVDYLSGEFLDEQ 675
           +                 ND  L D++  EFL+EQ
Sbjct: 212 LLSACPIYVFYSMVASRCNDPQLTDFVESEFLEEQ 246


>11_06_0476 +
           24044255-24044431,24046902-24046958,24047095-24047140,
           24047195-24047310
          Length = 131

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
 Frame = +2

Query: 236 RQPRHHRDEWLTMEQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 415
           + P+H +  +   E T Y M    +QE     + Y+    Y+ I     P    Y   + 
Sbjct: 29  QMPQHEKKRYFG-EDTIYKMYNNPLQERSRKKLVYIFWDRYYLIGNEQHPDKVDYPIFII 87

Query: 416 LKNA---STRPSSLTT 454
           LK      T P+S  T
Sbjct: 88  LKKVLEDETPPNSTWT 103


>07_03_0574 - 19629875-19631032
          Length = 385

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -2

Query: 353 PPWLSTGLTRPLPPGXXXXXXXXXSAPW*ATHPDGDG-ADVTLCS 222
           PP+   G+ RPLP           +  W  T P  DG A V  CS
Sbjct: 164 PPYADDGIGRPLPGSRVTALAVVGAGIWTTTAPAEDGVASVRPCS 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,467,031
Number of Sequences: 37544
Number of extensions: 377978
Number of successful extensions: 1021
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)