Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0769
(744 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012) 33 0.24
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 29 4.0
SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61) 28 9.2
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0) 28 9.2
>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 489 RPHHVQGPANTSWESGASALEHALKLESDVTNSIREVIKTCE 614
R H + P W SG A++ AL LE V ++ E+ KT E
Sbjct: 59 REHAEKKPERDEWGSGLEAMQTALDLEKHVNQALIELEKTAE 100
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 278 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGF 391
+ C + KQI E+ AS Y +M YF + V+ PGF
Sbjct: 10 EECEAGINKQINLELYASYVYTSMACYFDREDVHLPGF 47
>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 278 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 400
+ C + KQI E+ AS YL+M +F D V PGF Y
Sbjct: 197 EECEAGINKQINLELYASYAYLSMAFHFDRDDVALPGFHKY 237
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 382 PRLREXFFDAATEEREHATKLIDYLLMRG 468
P + F A+ EEREHA KL+ + RG
Sbjct: 232 PGFHKYFLKASHEEREHAEKLMKFQNERG 260
>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
Length = 126
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 296 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGF 391
+ KQI +E+ A YL+M +F D +N PGF
Sbjct: 38 INKQINKELYAHYTYLSMAFHFDRDDINLPGF 69
>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 32.3 bits (70), Expect = 0.43
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 382 PRLREXFFDAATEEREHATKLIDYLLMRG 468
P + F +A+ EEREHA KL + L RG
Sbjct: 179 PGFHKYFMEASHEEREHAEKLAKFQLQRG 207
Score = 31.1 bits (67), Expect = 0.99
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 296 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 400
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 150 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKY 184
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 31.1 bits (67), Expect = 0.99
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 296 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 400
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 135 VNKQINLELYASYVYMSMAYHFDRDDVALPGFHKY 169
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 382 PRLREXFFDAATEEREHATKLIDYLLMRG 468
P + F A+ EEREHA KL + L RG
Sbjct: 164 PGFHKYFMKASHEEREHAEKLAKFQLQRG 192
>SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 31.1 bits (67), Expect = 0.99
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 296 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 400
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 18 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKY 52
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 382 PRLREXFFDAATEEREHATKLIDYLLMRG 468
P + F A+ EEREHA KL + L RG
Sbjct: 47 PGFHKYFIKASHEEREHAEKLAKFQLQRG 75
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 415 TEEREHATKLIDYLLMRGKLTGSVTDLITYRAPPTRRG 528
++ RE A + I L+ LTGS T++I R P RG
Sbjct: 1841 SDHREQAAQEIQAFLLDMILTGSKTEIIELRGPDKPRG 1878
>SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61)
Length = 315
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 495 HHVQGPANTSWESGASALEHALKLESDVTNSIREVIKTCES 617
HH+ P ++ SG S L LES T ++RE TC++
Sbjct: 198 HHIDQPIVSNLLSGTSGRSTPLGLESACTRAVRE---TCDA 235
>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1230
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 316 GSGRVNPV--LSHGGLLLDRYGEPPRLREXFFDAATEERE 429
GSG+ + L GGL+ D+YG PR + F A E ++
Sbjct: 672 GSGKTYTIGGLDTGGLMDDQYGIIPRAVKQIFQAFEESKQ 711
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,341,177
Number of Sequences: 59808
Number of extensions: 390359
Number of successful extensions: 889
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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