Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0768
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    31   0.11 
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    29   0.57 
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    27   1.8  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   1.8  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    27   2.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.3  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.0  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   4.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   7.1  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   7.1  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   7.1  

>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +3

Query: 315  EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQQTAEVYKA 494
            E+T   +  T E     +E+    RE  I  LRS L D  + VE  +   E  + E+ K 
Sbjct: 977  EKTLEMMNETHEQFKHLVESEISTREEKITSLRSELLDLNKRVEVLKEEKESSSKELAKQ 1036

Query: 495  IEDKI 509
            +ED +
Sbjct: 1037 LEDAV 1041



 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 333  IVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEK--TRXTLEQQTAEVYKAIEDK 506
            I+A +  L A+ E  +E+ E  +NE   R+K+  E  +K  +  T +     + + +E+K
Sbjct: 1592 ILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVEEK 1651

Query: 507  IPQ 515
            + +
Sbjct: 1652 LKE 1654


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 12/57 (21%), Positives = 30/57 (52%)
 Frame = +3

Query: 321 TNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQQTAEVYK 491
           T N I++ +    +  + HEE  +    ELR++++++++  E+ +        E+Y+
Sbjct: 85  TLNNILSMRTETGSMAKAHEEVSQQINTELRNKIREYIDQTEQQKVVAANAIEELYQ 141


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 339 ATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQ--QTAEVYKAIEDKIP 512
           A +E      + ++E +EA +NE R  L+  LEG ++    L++  Q  + YK  E +  
Sbjct: 5   AVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDSQLQKDYKYDESRAT 64

Query: 513 QLPT 524
           Q  T
Sbjct: 65  QEET 68


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 348 EALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQ 470
           E L  K+++  ++++  INEL  R+K +   V +   T+++
Sbjct: 530 EGLTLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDE 570


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 309 GCGTPPRSWPSSEQWRPSSSFQATSPLFSCLQLLXDLFDGRSLFG*VGATG 157
           G   P  S+ +S Q  P+SSF + S + S      ++ D  S+FG   A+G
Sbjct: 263 GISQPNSSFVNSGQGIPNSSFSSFSQVASGFSQSQNVNDPSSIFGPTVASG 313


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 7    DAIQLFRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYE 123
            D   L+  L R +   +E E  ++  +C E  K  L YE
Sbjct: 2536 DEHDLYHGLWRRRANFLETEVATSHEQCHEWEKAQLVYE 2574


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 288 SWPSSEQWRPSSSFQATSPLFSCLQL 211
           S+ SS +  PS+S + T P+  CLQL
Sbjct: 155 SFTSSPRPPPSASIEDTYPIIHCLQL 180


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 7   DAIQLFRSLCRLKVEAMEVETKSTEIRCQEM 99
           DA  +FRS+CRL V     + K + IR Q M
Sbjct: 388 DAFLVFRSMCRLAVRQTSPD-KVSNIRSQAM 417


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 52  AMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPS 192
           A+  ETKST     ++  GG A    +A P  +P P    +P   P+
Sbjct: 867 AITPETKST---VNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPA 910


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 303 GTPPRSWPSSEQWRPSSSFQATSPLFS 223
           G+PP   PSS     SSS+  T+P FS
Sbjct: 531 GSPPS--PSSSTKSASSSYSTTTPAFS 555


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 393  AYINELRSRLKDHLEGVEKTRXTLEQQTAEVYKAIEDKI 509
            A IN+  ++  + L G+E T   LE+ +AE    I+D +
Sbjct: 949  AQINDHLAQRGNMLGGIENTMDDLEEMSAEWANEIKDSL 987


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,528
Number of Sequences: 5004
Number of extensions: 31963
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)