BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0768 (644 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g67230.1 68414.m07652 expressed protein 29 2.6 At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 29 3.5 At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 29 3.5 At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 29 3.5 At1g47900.1 68414.m05334 expressed protein 29 3.5 At1g40133.1 68414.m04768 hypothetical protein 29 3.5 At5g08780.1 68418.m01041 histone H1/H5 family protein contains P... 27 8.1 At4g17220.1 68417.m02590 expressed protein 27 8.1 At1g42960.1 68414.m04946 expressed protein 27 8.1 >At1g67230.1 68414.m07652 expressed protein Length = 1132 Score = 29.1 bits (62), Expect = 2.6 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +3 Query: 333 IVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQQ-TAEVYKAIEDK 506 + ++ALD K+E H+EK N+ RLK + G EK + E+ E K +EDK Sbjct: 392 VAKREQALDRKLEKHKEKE----NDFDLRLKG-ISGREKALKSEEKALETEKKKLLEDK 445 >At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana sylvestris]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 245 Score = 28.7 bits (61), Expect = 3.5 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +2 Query: 341 HQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*G 439 HQGG+ R + RG+ RG + + PS G G Sbjct: 86 HQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGG 118 >At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protein-related similar to matrix-localized MAR DNA binding protein MFP1 GI:1771158 from [Lycopersicon esculentum] Length = 726 Score = 28.7 bits (61), Expect = 3.5 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 13/71 (18%) Frame = +3 Query: 345 KEALDAKMETHEEKREAYINEL------RSRLKDHLEGV-------EKTRXTLEQQTAEV 485 KE + ++ ++K E +EL R R+KD LEGV +L+++ E+ Sbjct: 489 KERYERNLDAEKQKNEISASELALEKDLRRRVKDELEGVTHELKESSVKNQSLQKELVEI 548 Query: 486 YKAIEDKIPQL 518 YK +E +L Sbjct: 549 YKKVETSNKEL 559 Score = 27.9 bits (59), Expect = 6.1 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = +3 Query: 348 EALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQQTAEVYKAIEDKIPQL 518 E L+ ++ T ++E+YI +L S KD+ ++ T T AE+ E +I QL Sbjct: 342 EELNTRITTLVAEKESYIQKLDSISKDY-SALKLTSETQAAADAELISRKEQEIQQL 397 >At1g64330.1 68414.m07290 myosin heavy chain-related similar to myosin heavy chain (GI:1850913) [Entamoeba histolytica]; similar to Intracellular protein transport protein USO1 (Swiss-Prot:P25386) [Saccharomyces cerevisiae] Length = 555 Score = 28.7 bits (61), Expect = 3.5 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Frame = +3 Query: 342 TKEALDAKMETHEEKREAYINELRSRLKDH---LEGVEKTRXTLEQQTAEVYKAIEDK 506 T+ L+ K+E +++R+ EL S+ KDH LE V + + + AE+ + ++K Sbjct: 196 TESDLNQKLEDVKKERDGLEAELASKAKDHESTLEEVNRLQGQKNETEAELEREKQEK 253 >At1g47900.1 68414.m05334 expressed protein Length = 1054 Score = 28.7 bits (61), Expect = 3.5 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +3 Query: 363 KMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQQTAEVYKAIEDKIP 512 ++E E++ I S K HLEGV+K LE + + + K+P Sbjct: 294 ELEIRNEEKNMCIRSAESANKQHLEGVKKI-AKLEAECQRLRSLVRKKLP 342 >At1g40133.1 68414.m04768 hypothetical protein Length = 663 Score = 28.7 bits (61), Expect = 3.5 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 318 QTNNFIVATKEALDAKMETHEEKREAYINE 407 + NN A +A AKME E +REA++N+ Sbjct: 474 EANNRDEALSQAAAAKMEKEEVEREAFVNK 503 >At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam domain, PF00538: linker histone H1 and H5 family Length = 457 Score = 27.5 bits (58), Expect = 8.1 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 46 VEAMEVETKSTEIRCQEMSKGGLAYEV 126 VE ++VE E R + S+GG YEV Sbjct: 229 VEVVDVENSENEARIEANSRGGELYEV 255 >At4g17220.1 68417.m02590 expressed protein Length = 513 Score = 27.5 bits (58), Expect = 8.1 Identities = 16/58 (27%), Positives = 31/58 (53%) Frame = +3 Query: 333 IVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQQTAEVYKAIEDK 506 ++A K ++A + T+EE ++ ELR ++ E + T ++Q+ E K E+K Sbjct: 26 LLAAKAEVEA-LRTNEELKDRVFKELRENVRKLEEKLGATENQVDQKELERKKLEEEK 82 >At1g42960.1 68414.m04946 expressed protein Length = 168 Score = 27.5 bits (58), Expect = 8.1 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = +3 Query: 387 REAYINELRSRLKDHLEGVEKTRXTLEQQTAEVYKAIEDKIPQL 518 R+ + +L + D + +EKTR L ++ A++ AI+D QL Sbjct: 105 RKDLMRKLPKFIYDEEKALEKTRKVLAEKIAQLNSAIDDVSSQL 148 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.317 0.131 0.388 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,985,336 Number of Sequences: 28952 Number of extensions: 191608 Number of successful extensions: 728 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 711 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 728 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1334473344 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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