Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0768
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67230.1 68414.m07652 expressed protein                             29   2.6  
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    29   3.5  
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    29   3.5  
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m...    29   3.5  
At1g47900.1 68414.m05334 expressed protein                             29   3.5  
At1g40133.1 68414.m04768 hypothetical protein                          29   3.5  
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    27   8.1  
At4g17220.1 68417.m02590 expressed protein                             27   8.1  
At1g42960.1 68414.m04946 expressed protein                             27   8.1  

>At1g67230.1 68414.m07652 expressed protein
          Length = 1132

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 333 IVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQQ-TAEVYKAIEDK 506
           +   ++ALD K+E H+EK     N+   RLK  + G EK   + E+    E  K +EDK
Sbjct: 392 VAKREQALDRKLEKHKEKE----NDFDLRLKG-ISGREKALKSEEKALETEKKKLLEDK 445


>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 341 HQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*G 439
           HQGG+ R +   RG+ RG  +  + PS G   G
Sbjct: 86  HQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGG 118


>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
 Frame = +3

Query: 345 KEALDAKMETHEEKREAYINEL------RSRLKDHLEGV-------EKTRXTLEQQTAEV 485
           KE  +  ++  ++K E   +EL      R R+KD LEGV            +L+++  E+
Sbjct: 489 KERYERNLDAEKQKNEISASELALEKDLRRRVKDELEGVTHELKESSVKNQSLQKELVEI 548

Query: 486 YKAIEDKIPQL 518
           YK +E    +L
Sbjct: 549 YKKVETSNKEL 559



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +3

Query: 348 EALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQQTAEVYKAIEDKIPQL 518
           E L+ ++ T   ++E+YI +L S  KD+   ++ T  T     AE+    E +I QL
Sbjct: 342 EELNTRITTLVAEKESYIQKLDSISKDY-SALKLTSETQAAADAELISRKEQEIQQL 397


>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
           myosin heavy chain (GI:1850913) [Entamoeba histolytica];
           similar to Intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae]
          Length = 555

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +3

Query: 342 TKEALDAKMETHEEKREAYINELRSRLKDH---LEGVEKTRXTLEQQTAEVYKAIEDK 506
           T+  L+ K+E  +++R+    EL S+ KDH   LE V + +    +  AE+ +  ++K
Sbjct: 196 TESDLNQKLEDVKKERDGLEAELASKAKDHESTLEEVNRLQGQKNETEAELEREKQEK 253


>At1g47900.1 68414.m05334 expressed protein
          Length = 1054

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 363 KMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQQTAEVYKAIEDKIP 512
           ++E   E++   I    S  K HLEGV+K    LE +   +   +  K+P
Sbjct: 294 ELEIRNEEKNMCIRSAESANKQHLEGVKKI-AKLEAECQRLRSLVRKKLP 342


>At1g40133.1 68414.m04768 hypothetical protein
          Length = 663

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 318 QTNNFIVATKEALDAKMETHEEKREAYINE 407
           + NN   A  +A  AKME  E +REA++N+
Sbjct: 474 EANNRDEALSQAAAAKMEKEEVEREAFVNK 503


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 46  VEAMEVETKSTEIRCQEMSKGGLAYEV 126
           VE ++VE    E R +  S+GG  YEV
Sbjct: 229 VEVVDVENSENEARIEANSRGGELYEV 255


>At4g17220.1 68417.m02590 expressed protein
          Length = 513

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +3

Query: 333 IVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQQTAEVYKAIEDK 506
           ++A K  ++A + T+EE ++    ELR  ++   E +  T   ++Q+  E  K  E+K
Sbjct: 26  LLAAKAEVEA-LRTNEELKDRVFKELRENVRKLEEKLGATENQVDQKELERKKLEEEK 82


>At1g42960.1 68414.m04946 expressed protein
          Length = 168

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 387 REAYINELRSRLKDHLEGVEKTRXTLEQQTAEVYKAIEDKIPQL 518
           R+  + +L   + D  + +EKTR  L ++ A++  AI+D   QL
Sbjct: 105 RKDLMRKLPKFIYDEEKALEKTRKVLAEKIAQLNSAIDDVSSQL 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,985,336
Number of Sequences: 28952
Number of extensions: 191608
Number of successful extensions: 728
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)